Locus 1712

Sequence ID 3R_DroMel_CAF1
Location 4,915,196 – 4,915,301
Length 105
Max. P 0.971686
window2822

overview

Window 2

Location 4,915,196 – 4,915,301
Length 105
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 96.05
Mean single sequence MFE -19.63
Consensus MFE -19.26
Energy contribution -19.26
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.98
SVM decision value 1.68
SVM RNA-class probability 0.971686
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4915196 105 - 27905053
ACCACAUAUGGCAGCUUAAUUUCAUUUAGCUGUGACCUCCCUUGCCCUG--CGCCU-UCC---UUUCCUUCGGGCCAUUCUCAUGAAUUUUUCUCAUGGUCUUCGUACGCU
......((((((((((...........))))))((((......((((..--.....-...---........)))).((((....)))).........))))..)))).... ( -19.67)
>DroSec_CAF1 22826 106 - 1
ACCACAUAUGGCAGCUUAAUUUCAUUUAGCUGUGACCUCCCUUGCCCUG--CGCCUUUCC---UUUCCUUCGGGCCAUUCUCAUGAAUUUUUCUCAUGGUCUUCGUACGCU
......((((((((((...........))))))((((......((((..--.........---........)))).((((....)))).........))))..)))).... ( -19.61)
>DroSim_CAF1 22874 106 - 1
ACCACAUAUGGCAGCUUAAUUUCAUUUAGCUGUGACCUCCCUUGCCCUG--CGCCUUUCC---UUUCCUUCGGGCCAUUCUCAUGAAUUUUUCUCAUGGUCUUCGUACGCU
......((((((((((...........))))))((((......((((..--.........---........)))).((((....)))).........))))..)))).... ( -19.61)
>DroEre_CAF1 21918 109 - 1
ACCACAUAUGGCAGCUUAAUUUCAUUUAGCUGUGACCUCCCUUGCCCUG--CGUCUUUCCUCAUUUCCUUCGGGCCAUUCUCAUGAAUUUUUCUCAUGGUCUUCGUACGCU
......((((((((((...........))))))((((......((((..--....................)))).((((....)))).........))))..)))).... ( -19.45)
>DroYak_CAF1 23037 111 - 1
ACCACAUAUGGCAGCUUAAUUUCAUUUAGCUGUGACCUCCCUUGCCCCGCGCGCCUUUCCUCCAUUCCUUCGGGCCAUUCUCAUGAAUUUUUCUCAUGGUCUUCGUACGCU
........(.((((((...........)))))).).............(((..(............((....))......((((((.......)))))).....)..))). ( -19.80)
>consensus
ACCACAUAUGGCAGCUUAAUUUCAUUUAGCUGUGACCUCCCUUGCCCUG__CGCCUUUCC___UUUCCUUCGGGCCAUUCUCAUGAAUUUUUCUCAUGGUCUUCGUACGCU
......((((((((((...........))))))((((......((((........................)))).((((....)))).........))))..)))).... (-19.26 = -19.26 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:32 2006