Locus 1711

Sequence ID 3R_DroMel_CAF1
Location 4,914,960 – 4,915,069
Length 109
Max. P 0.724126
window2821

overview

Window 1

Location 4,914,960 – 4,915,069
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 90.31
Mean single sequence MFE -25.26
Consensus MFE -21.32
Energy contribution -21.88
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.43
Structure conservation index 0.84
SVM decision value 0.41
SVM RNA-class probability 0.724126
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4914960 109 - 27905053
AGGGCUGGAAUCCUAAAGACCGCCAGGGCACACAUUAAAAUUGUAUGAUGUGGCAGGGUGCGCAAGGCAGGUGCACCGAAAAAAUAAAAAAGAAAGUUUAAAAAUAUGC
....((((..((.....))...)))).((.(((((((........)))))))))..(((((((.......)))))))................................ ( -26.10)
>DroSec_CAF1 22577 108 - 1
AGGGCUGGAAUCCUAAAGACCGACAGGGCACACAUUAAAAUUGUAUGGUGUGGCAGGGUGCGCAAGGCAGGUGCACCGAAAAAAUAAA-AAGAAAGUUUACAAAUAUGC
((((......)))).....((....))((.(((((((........)))))))))..(((((((.......)))))))...........-.................... ( -24.20)
>DroSim_CAF1 22619 108 - 1
AGGGCUGGAAUCCUAAAGACCGACAGGGCACACAUUAAAAUUGUAUGGUGUGGCAGGGUGCGCAAGGCAGGUGCACCGAAAAAAUAAA-AAGAAAUUUGAAAAAUAUGC
((((......)))).....((....))((.(((((((........)))))))))..(((((((.......)))))))...........-.................... ( -24.20)
>DroEre_CAF1 21682 99 - 1
AGGGCUGGAAUCCUAAAGACCGUCAGGGCACACAUUAAAAUUGUAUGGUGUGGCAGGGUGCGCACGCCAGCUGCACCGAAAAAAUAAA-AAGAAAGUUCG---------
.(((((.............((....))((.(((((((........)))))))))..(((((((......)).)))))...........-.....))))).--------- ( -25.10)
>DroYak_CAF1 22801 106 - 1
AGGGCUGGAAUCCUAAAGACCGCCAGGGCACACAUUAAAAUUGUAUGAUGUGGCAGGGUG--CAGGGCAGCUGCACCGAAAAAAUAUA-AAGAAAGUUUACAAAUAUUC
....((((..((.....))...)))).((.(((((((........)))))))))..((((--(((.....)))))))...........-.................... ( -26.70)
>consensus
AGGGCUGGAAUCCUAAAGACCGACAGGGCACACAUUAAAAUUGUAUGGUGUGGCAGGGUGCGCAAGGCAGGUGCACCGAAAAAAUAAA_AAGAAAGUUUAAAAAUAUGC
((((......)))).....((....))((.(((((((........)))))))))..(((((((.......)))))))................................ (-21.32 = -21.88 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:31 2006