Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,909,095 – 4,909,190 |
Length | 95 |
Max. P | 0.725009 |
Location | 4,909,095 – 4,909,190 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.45 |
Mean single sequence MFE | -25.71 |
Consensus MFE | -18.82 |
Energy contribution | -18.93 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -1.22 |
Structure conservation index | 0.73 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4909095 95 - 27905053 GAGCAU----UUCCCCUGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGC-----GCUGAAAAUUGUACACCAGGGAGCUUAUUAAGCACGCUUC--------CCC-- ((((..----...(((((((((..(..(((((......(((......)))......-----)))))...)..)))).))))).(((.....)))..)))).--------...-- ( -26.70) >DroVir_CAF1 20622 101 - 1 GUGGAAUUGUUUCCCCUGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGCGACUCGCUCAAAAUUGUACACCUGGGAGCUUAUUAAGUCGGGACC------------- ........((..((((.(((((..(....(((..((((....)))).(((((....)))))))).....)..)))))..))).(((.....))).)..)).------------- ( -22.90) >DroGri_CAF1 20940 105 - 1 GCGGAG----UUCCCCAGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGC-----GCUGAAAAUCGUACACCUGGGAGCUUAUUAAGUCAAGACCCGCUCGCUCGCAA ((((((----(((((..((((((((..(((((......(((......)))......-----)))))...))))))))..)))))))......((....)))))).......... ( -34.00) >DroWil_CAF1 17982 94 - 1 GAGGAG----UUCCCCAGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGC-----GCUGAAAAUUGUACUCAAGGGAGCUUAUUAAGCAUGAAAA--------CC--- ...(((----(((((((((((.((((.((..................)))))).))-----))))....(((....)))))))))))..............--------..--- ( -23.37) >DroYak_CAF1 16846 91 - 1 GGGCAG----CUCCCCUGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGC-----GCUGAAAAUUGCACACCAGGGAGCUUAUUAAGCACGCUU-------------- ..((((----(((((.((((((.....(((((......(((......)))......-----)))))....))))))...)))))))......))......-------------- ( -25.50) >DroMoj_CAF1 19959 100 - 1 ----------UUCCCCUGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGCGACCUGCUGAAAAUUGUACACCUGGGAGCUUAUUAAGUCAAGACCCGC----UCGCAA ----------(((((..(((((..(..(((((.......((......))(((....)))..)))))...)..)))))..)))))....................----...... ( -21.80) >consensus GAGGAG____UUCCCCUGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGC_____GCUGAAAAUUGUACACCAGGGAGCUUAUUAAGCAAGGACC________C____ ...........((((..((((((((..(((((......(((.((.....)).)))......)))))...))))))))..))))(((.....))).................... (-18.82 = -18.93 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:28 2006