Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,894,349 – 4,894,450 |
Length | 101 |
Max. P | 0.553264 |
Location | 4,894,349 – 4,894,450 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 96.04 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -29.10 |
Energy contribution | -29.73 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.06 |
Mean z-score | -1.55 |
Structure conservation index | 0.90 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553264 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4894349 101 + 27905053 AUUCGCUGGCUUACACUAACUACUACAGCUAAGCAGCUCGCUGUGUCCUUUGUGUCUGUGUGGGUGUGUAGAUGUGUUGGUGUUCGUGUCGGUGUGAGUGU ...(((((((..((((((((((((((((((..((((..(((..........))).))))...))).))))).)).))))))))....)))))))....... ( -32.60) >DroSec_CAF1 2349 101 + 1 AUUCGCUGGCUUACACUAACUACUACAGCUAAGCAGCUCGCUGUGUCCUUUGUGUCUGUGUGGGUGUGUAGAUGUGUUGGUGUUCGUGUCGGUGUGAGUGU ...(((((((..((((((((((((((((((..((((..(((..........))).))))...))).))))).)).))))))))....)))))))....... ( -32.60) >DroSim_CAF1 2292 101 + 1 AUUCGCUGGCUUACACUAACUACUACAGCUAAGCAGCUCGCUGUGUCCUUUGUGUCUGUGUGGUUGUGUAGAUGUGUUGGUGUUCGUGUCGGUGUGAGUGU ...(((((((..(((((((((((.(((((((.((((..(((..........))).)))).)))))))))).....))))))))....)))))))....... ( -33.40) >DroYak_CAF1 2408 101 + 1 AUUCGCUGGCUUACACUAACUACUACAGCUAAGCAGCUCGCUGUGUCCUUUGUGUCUGUGUGAGUGUGUAGAUGUGUACGUGUUCGUGUGAGUGUGGGCGU ...((((.((((((((.(((.((((((.(((.(((.(((((...(.(......).)...)))))))).)))...)))).))))).))))))))...)))). ( -30.60) >consensus AUUCGCUGGCUUACACUAACUACUACAGCUAAGCAGCUCGCUGUGUCCUUUGUGUCUGUGUGGGUGUGUAGAUGUGUUGGUGUUCGUGUCGGUGUGAGUGU ...(((((((..((((((((((((((((((..((((..(((..........))).))))...))).))))).)).))))))))....)))))))....... (-29.10 = -29.73 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:15 2006