Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,880,062 – 4,880,159 |
Length | 97 |
Max. P | 0.999630 |
Location | 4,880,062 – 4,880,159 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 76.34 |
Mean single sequence MFE | -19.03 |
Consensus MFE | -14.13 |
Energy contribution | -14.47 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.74 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4880062 97 + 27905053 UCUUGUUUUAUUUUUCUUUUCCGCUGCCUCUUUAAUUUUCAUUUGCGCCCGUUGAGCAUUGGAGCUCAACUGAGGCCGCAUGACCGAAAGCAAUGAG (((((((((.....((......((.(((((..(((.......))).....(((((((......))))))).))))).))..))...))))))).)). ( -22.90) >DroPse_CAF1 361 85 + 1 -----------UCUCCCUCUCC-CUCCUCCACCAUCUCGCUCUCGCUCCCGUUGAGCAUUGGAGCUCAACUGAUGCCUCAUGACCAAAAGCAAUGAG -----------...........-.........((((..((....))....(((((((......))))))).)))).(((((...........))))) ( -17.10) >DroPer_CAF1 355 85 + 1 -----------UCUCCCUCUCC-CUCCUCCUCCAUCUCGCUCUCGCUCCCGUUGAGCAUUGGAGCUCAACUGAUGCCUCAUGACCAAAAGCAAUGAG -----------...........-.........((((..((....))....(((((((......))))))).)))).(((((...........))))) ( -17.10) >consensus ___________UCUCCCUCUCC_CUCCUCCUCCAUCUCGCUCUCGCUCCCGUUGAGCAUUGGAGCUCAACUGAUGCCUCAUGACCAAAAGCAAUGAG ............................................((..(.(((((((......))))))).)..))(((((...(....)..))))) (-14.13 = -14.47 + 0.33)
Location | 4,880,062 – 4,880,159 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 76.34 |
Mean single sequence MFE | -28.87 |
Consensus MFE | -19.81 |
Energy contribution | -19.70 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.11 |
Mean z-score | -2.85 |
Structure conservation index | 0.69 |
SVM decision value | 3.81 |
SVM RNA-class probability | 0.999630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4880062 97 - 27905053 CUCAUUGCUUUCGGUCAUGCGGCCUCAGUUGAGCUCCAAUGCUCAACGGGCGCAAAUGAAAAUUAAAGAGGCAGCGGAAAAGAAAAAUAAAACAAGA ........((((..((.(((.(((((.(((((((......))))))).......(((....)))...))))).)))))...))))............ ( -28.80) >DroPse_CAF1 361 85 - 1 CUCAUUGCUUUUGGUCAUGAGGCAUCAGUUGAGCUCCAAUGCUCAACGGGAGCGAGAGCGAGAUGGUGGAGGAG-GGAGAGGGAGA----------- (((....(((((..((....(.((((.(((((((......)))))))....((....))..)))).)....)).-.))))).))).----------- ( -28.30) >DroPer_CAF1 355 85 - 1 CUCAUUGCUUUUGGUCAUGAGGCAUCAGUUGAGCUCCAAUGCUCAACGGGAGCGAGAGCGAGAUGGAGGAGGAG-GGAGAGGGAGA----------- (((.(((((((((.((.(((....)))(((((((......)))))))..)).)))))))))....)))......-...........----------- ( -29.50) >consensus CUCAUUGCUUUUGGUCAUGAGGCAUCAGUUGAGCUCCAAUGCUCAACGGGAGCGAGAGCGAGAUGGAGGAGGAG_GGAGAGGGAGA___________ ....((((((((.(((....)))....(((((((......))))))))))))))).......................................... (-19.81 = -19.70 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:13 2006