Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,872,819 – 4,872,915 |
Length | 96 |
Max. P | 0.611578 |
Location | 4,872,819 – 4,872,915 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 78.11 |
Mean single sequence MFE | -26.56 |
Consensus MFE | -15.63 |
Energy contribution | -16.86 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.37 |
Mean z-score | -1.58 |
Structure conservation index | 0.59 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611578 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4872819 96 + 27905053 AUGUUGCCAAAACUGGUGACAUUAGCAACGCCGAAACUAACGCCAGUGGAGUUUAUUAAA------UUGGUAGCACCCAAUUGGCAAAUUCCGCCGUUGUUC ((((..(((....)))..)))).(((((((......(....)...(((((((((....((------((((......))))))...)))))))))))))))). ( -29.80) >DroSec_CAF1 4399 102 + 1 GUGUUGCCAAAAUUGGUUACAUUAGCAACGCCGACACCAGCGCCAGUGGAGUUCAUUAAAUUGAAAUUGGUAGCAUCCAAUUGGGAAAUUCCGCCGUUGUUC ((((.((((....)))).)))).(((((((.((......((((((((....((((......)))))))))).)).(((.....))).....)).))))))). ( -26.90) >DroSim_CAF1 4435 102 + 1 GUGUUGCCAAAAUUGGUGACAUUAGCAACGCCGACACCAGCGCCAGUGGAGUUCAUUAAAUUGAAAUUGGUAGCAUCCAAUUGGCAAAUUCCGCCGUUGUUC ((((..(((....)))..)))).(((((((.((........((((((((((((.(((((.......)))))))).))).))))))......)).))))))). ( -29.84) >DroEre_CAF1 5322 96 + 1 AUGUUGCCAAAACUGGUGACAUUAGCAACGCCGACACCAACGCCAGCGGAGUUGAUUAAA------UUGGUAGCAUCCAAUUGGCAAAUUCCGCCGUUGUUC ((((..(((....)))..)))).(((((((.((.......))...((((((((.....((------((((......))))))....))))))))))))))). ( -31.80) >DroYak_CAF1 4470 96 + 1 AUGUUCCCGAAACUGGUGACAUUAGCAACGCCGACACCAACGCCAGCGGAGUUGAUUAAA------UUGGUAGCAUCCAAUUGGCAAAUUCCGUCGUUGUUC ((((..(((....)))..))))...............(((((...((((((((.....((------((((......))))))....)))))))))))))... ( -26.10) >DroAna_CAF1 6065 78 + 1 AUAUUGCCAAAAUUCAUGGCGUUCGGGACAC------------CAGAGGAAUUUAACAAA------UUAGUCGCGUCCAG-AGUCAAA-----CCGCCAUUC ...............(((((((((.((((..------------..((..((((.....))------))..))..)))).)-)).....-----.)))))).. ( -14.90) >consensus AUGUUGCCAAAACUGGUGACAUUAGCAACGCCGACACCAACGCCAGUGGAGUUCAUUAAA______UUGGUAGCAUCCAAUUGGCAAAUUCCGCCGUUGUUC (((((((((....)))))))))...............(((((...((((((((..((((.......((((......))))))))..)))))))))))))... (-15.63 = -16.86 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:10 2006