Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,871,353 – 4,871,446 |
Length | 93 |
Max. P | 0.605977 |
Location | 4,871,353 – 4,871,446 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 83.01 |
Mean single sequence MFE | -31.60 |
Consensus MFE | -21.81 |
Energy contribution | -24.37 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.13 |
Mean z-score | -1.86 |
Structure conservation index | 0.69 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605977 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4871353 93 + 27905053 UCACUUAUAGUCUGAUCAUGCUGUGAAAGGUUUGGCAAGCCAUUUGGUGGCUGCGCCAAGCCCAGCGUUUUGGGCAGAUCCAGCGAGUUAUUA .........(((..(..((((((.....((((((((.((((((...))))))..)))))))))))))).)..))).................. ( -33.40) >DroSec_CAF1 2933 93 + 1 UGACUUAUAGUCUGUUCAUGCUGCGAAAGGUUUGGCAAGCCAUUUGGUGCCUGCGCCAAGCAUAGCGUUUUGGGCAGAUCCAGCGAGUUAUUA ((((((...(((((((((((((((....)(((((((..(((....)))(....)))))))).)))))...))))))))).....))))))... ( -31.30) >DroSim_CAF1 2969 93 + 1 UGACUUAUAGUCUGUUCAUGCUGCGAAAGGUUUGGCAAGCCAUUUGGUGCCUGCGCCAAGCCCAGCGUUUUGGGCAGAUCCAGCGAGUUAUUA ((((((...(((((((((....(((...((((((((..(((....)))(....)))))))))...)))..))))))))).....))))))... ( -33.40) >DroEre_CAF1 3814 93 + 1 UGACUUAUAGUCUGAUCAUGCUGCGAAAGGUUUAUCAAGCCAUUUGCAGGCUGCGCCAAGCCCAGCGUUUUGGGCAGAUCCAGCGAGUUAUUG ((((((..............(((((((.((((.....)))).)))))))((((.(....((((((....))))))....)))))))))))... ( -30.40) >DroYak_CAF1 3025 93 + 1 UGACUUAUCGUCUGACCAUGCUGCGAAAGGUUUGGCAGGCCAUUCGGUGGCUGAGCCAAGCCCAGCGUUCUGGGCAGAUCCAGAGAGUUAUUG ((((((.(((((((.((((((((.....((((((((.((((((...))))))..)))))))))))))...))).)))))...))))))))... ( -37.70) >DroMoj_CAF1 4137 81 + 1 UGACUAAUUGUCUGAUCAUGCUGUGACACGUUGGCCACGCCCU------GCUGCG------GCACCGUCUUGGGCAGCUCGACUGAGUUGUUU .(((.....))).(((..((((((..((....(((...))).)------)..)))------)))..)))..(((((((((....))))))))) ( -23.40) >consensus UGACUUAUAGUCUGAUCAUGCUGCGAAAGGUUUGGCAAGCCAUUUGGUGGCUGCGCCAAGCCCAGCGUUUUGGGCAGAUCCAGCGAGUUAUUA ((((((...(((((..(((((((.....((((((((.(((((.....)))))..)))))))))))))...))..))))).....))))))... (-21.81 = -24.37 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:07 2006