Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,865,882 – 4,865,977 |
Length | 95 |
Max. P | 0.828446 |
Location | 4,865,882 – 4,865,977 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 81.72 |
Mean single sequence MFE | -32.82 |
Consensus MFE | -23.40 |
Energy contribution | -23.07 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.18 |
Mean z-score | -2.13 |
Structure conservation index | 0.71 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828446 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4865882 95 + 27905053 C-----------GAUUAGAUCCGGUAAGAAGGGCGCUCCACGUGAGUACUACACGCUGGAGUGCCUGCUGUACCUGCUCAAGAAUGUGAUGCUGCAACACUCGGUC .-----------.....((((.((((....((((((((((((((.......)))).))))))))))....)))).(((((......))).))..........)))) ( -34.00) >DroVir_CAF1 55610 106 + 1 CGUAAUUUGUUUUUGCAGCUCUGGUAAAAAGGGCGCUCCACGUGAAUAUUAUACGCUGGAGUGCCUGCUGUACUUGCUCAAGAAUGUUAUGCUCCAGCAUUCGGUG ((((((..(((((((.(((...((((....((((((((((((((.......)))).))))))))))....)))).))))))))))))))))............... ( -36.90) >DroPse_CAF1 54764 94 + 1 ------------UUGCAGUUCGGGCAAGAAGGGCGCUCCACGUGAAUACUACACGUUGGAGUGCCUACUGUAUUUGCUGAAAAAUGUUAUGCUCCAGCACUCGGUG ------------.((((((((......)).((((((((((((((.......)))).))))))))))))))))..(((((...............)))))....... ( -32.96) >DroWil_CAF1 60155 94 + 1 ------------UUUCAGAUCCGGAAAAAAGGGUGCUCCGCGUGAAUACUAUACGCUGGAGUGCCUCUUGUAUCUAUUAAAAAAUGUGAUGCUCCAGCACUCGGUG ------------........((((....(((((..(((((((((.......))))).))))..)).)))(((((((((....)))).)))))........)))).. ( -28.60) >DroAna_CAF1 47483 95 + 1 C-----------UUUCAGAUCCGGCAAGAAGGGCGCUCCACGUGAAUAUUACACGCUGGAGUGCCUGCUGUACCUGCUCAAGAAUGUUAUGCUUCAGCACUCCGUG .-----------.........(((......((((((((((((((.......)))).))))))))))((((.....((.............))..))))...))).. ( -31.52) >DroPer_CAF1 55403 94 + 1 ------------UUGCAGUUCGGGAAAGAAGGGCGCUCCACGUGAAUACUACACGUUGGAGUGCCUACUGUAUUUGCUGAAAAAUGUUAUGCUCCAGCACUCGGUG ------------.((((((((......)).((((((((((((((.......)))).))))))))))))))))..(((((...............)))))....... ( -32.96) >consensus ____________UUGCAGAUCCGGAAAGAAGGGCGCUCCACGUGAAUACUACACGCUGGAGUGCCUGCUGUACCUGCUCAAAAAUGUUAUGCUCCAGCACUCGGUG ..............................((((((((((((((.......)))).)))))))))).......................(((....)))....... (-23.40 = -23.07 + -0.33)
Location | 4,865,882 – 4,865,977 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 81.72 |
Mean single sequence MFE | -27.47 |
Consensus MFE | -19.79 |
Energy contribution | -19.65 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.25 |
Mean z-score | -1.32 |
Structure conservation index | 0.72 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549443 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4865882 95 - 27905053 GACCGAGUGUUGCAGCAUCACAUUCUUGAGCAGGUACAGCAGGCACUCCAGCGUGUAGUACUCACGUGGAGCGCCCUUCUUACCGGAUCUAAUC-----------G ((((((((((.........)))))).......((((.((..(((.(((((.((((.......))))))))).)))...)))))))).)).....-----------. ( -29.90) >DroVir_CAF1 55610 106 - 1 CACCGAAUGCUGGAGCAUAACAUUCUUGAGCAAGUACAGCAGGCACUCCAGCGUAUAAUAUUCACGUGGAGCGCCCUUUUUACCAGAGCUGCAAAAACAAAUUACG .......((((.(((.(......)))).))))....((((.(((.(((((.(((.........)))))))).)))((.......)).))))............... ( -24.70) >DroPse_CAF1 54764 94 - 1 CACCGAGUGCUGGAGCAUAACAUUUUUCAGCAAAUACAGUAGGCACUCCAACGUGUAGUAUUCACGUGGAGCGCCCUUCUUGCCCGAACUGCAA------------ .......((((((((.........))))))))....((((.(((.(((((.((((.......))))))))).)))..((......))))))...------------ ( -28.20) >DroWil_CAF1 60155 94 - 1 CACCGAGUGCUGGAGCAUCACAUUUUUUAAUAGAUACAAGAGGCACUCCAGCGUAUAGUAUUCACGCGGAGCACCCUUUUUUCCGGAUCUGAAA------------ ..(((.((((....))))..............((...((((((..((((.((((.........))))))))...)))))).)))))........------------ ( -21.20) >DroAna_CAF1 47483 95 - 1 CACGGAGUGCUGAAGCAUAACAUUCUUGAGCAGGUACAGCAGGCACUCCAGCGUGUAAUAUUCACGUGGAGCGCCCUUCUUGCCGGAUCUGAAA-----------G ..((((.((((.(((.(......)))).))))((((.((..(((.(((((.((((.......))))))))).)))...))))))...))))...-----------. ( -32.60) >DroPer_CAF1 55403 94 - 1 CACCGAGUGCUGGAGCAUAACAUUUUUCAGCAAAUACAGUAGGCACUCCAACGUGUAGUAUUCACGUGGAGCGCCCUUCUUUCCCGAACUGCAA------------ .......((((((((.........))))))))....((((.(((.(((((.((((.......))))))))).)))..((......))))))...------------ ( -28.20) >consensus CACCGAGUGCUGGAGCAUAACAUUCUUGAGCAAAUACAGCAGGCACUCCAGCGUGUAGUAUUCACGUGGAGCGCCCUUCUUACCGGAUCUGAAA____________ ......((((....)))).......................(((.((((.(((((.......))))))))).)))............................... (-19.79 = -19.65 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:06 2006