Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,865,110 – 4,865,213 |
Length | 103 |
Max. P | 0.982645 |
Location | 4,865,110 – 4,865,213 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 94.20 |
Mean single sequence MFE | -29.04 |
Consensus MFE | -24.42 |
Energy contribution | -24.82 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -2.07 |
Structure conservation index | 0.84 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4865110 103 + 27905053 GCAUUUUAAAGCUUUGCCUAAUUGUUAUUUGGAUGGAGCUGCCGGUCGCAAGGCUUUU-UUUUAGUGUGACCGCGUUAGUAUUUAAACAUGACAGUCCAGCUUU ((.......((((((..((((.......))))..))))))((.(((((((..(.....-...)..)))))))))((((((......)).))))......))... ( -24.10) >DroSec_CAF1 45447 103 + 1 GCAUUUUAAAGCUUUGUUUAAUUGUUAUUUGGAUGGAGCUGCCGGUCGCAAGGCUUUU-UUUUAGUGUGACCGCGUUAGUAUUUAAACGUGACAGGCCAGCUUU ((.......(((((..(((((.......)))))..)))))((((((((((..(.....-...)..)))))))(((((........)))))....)))..))... ( -30.90) >DroSim_CAF1 47438 103 + 1 GCAUUUUAAAGCUUUGUUUAAUUGUUAUUUGGAUGGAGCUGCCGGUCGCAAGGCUUUU-UUUUAGUGUGACCGCGUUAGUAUUUAAACGUGAAAGGCCUGCUUU (((......(((((..(((((.......)))))..)))))((((((((((..(.....-...)..)))))))(((((........)))))....))).)))... ( -31.30) >DroEre_CAF1 46067 104 + 1 GCAUUUUAAAGCUUUGUUUAAUUGUUAUUUGGAUGGAGCUGCCGGUCGCAAGGCUUUUUUUUUAGUGUGACCGCGUAAGUGUUUAAAUGUGACAGGCGAACUUU .........(((((..(((((.......)))))..)))))(((.((((((..(((........))).(((.(((....))).)))..)))))).)))....... ( -30.00) >DroYak_CAF1 46342 103 + 1 GCAUUUUAAAGCUUUGUUUAAUUGUUAUUUGGAUGGAGCUGCCGGUCGCAAGGCUUUU-UUUAAGUGUGACCGCGUUAGUGUUUAAAUGUGACAGGCGAACUUU .........(((((..(((((.......)))))..)))))(((.((((((..((((..-...)))).(((.(((....))).)))..)))))).)))....... ( -28.90) >consensus GCAUUUUAAAGCUUUGUUUAAUUGUUAUUUGGAUGGAGCUGCCGGUCGCAAGGCUUUU_UUUUAGUGUGACCGCGUUAGUAUUUAAACGUGACAGGCCAGCUUU .........((((..((((((.......))))))..))))(((((((((...(((........)))))))))(((((........)))))....)))....... (-24.42 = -24.82 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:04 2006