Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,862,822 – 4,862,917 |
Length | 95 |
Max. P | 0.735179 |
Location | 4,862,822 – 4,862,917 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 92.95 |
Mean single sequence MFE | -21.77 |
Consensus MFE | -17.10 |
Energy contribution | -18.26 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.17 |
Mean z-score | -1.71 |
Structure conservation index | 0.79 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.735179 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4862822 95 + 27905053 AAAGGCAGUGCUGUUCGAAGGAAAAGAAAAGGGAAAGGACUUCAGACAGGCCAAGGAAAAUGAAGGAGCCGUUUGAGGAGCAGUUGUCGUGUUUC ...(((((((((.(((....)))................((((((((.((((.............).))))))))))))))).)))))....... ( -24.42) >DroSec_CAF1 43106 95 + 1 AAAGGCAGAGCUGUUCGAAGGAAAAUAAAAGGGAAAGGACUUCAGACAGGCCAAGGAAAAUGAAGGAGCCGUUUGAGGAGCAGUUGUCGAGUUUC ...((((..(((((((....)).................((((((((.((((.............).))))))))))).)))))))))....... ( -22.42) >DroSim_CAF1 45093 95 + 1 AAAGGCAGAGCUGUUCGAAGGAAACUAAAAGGGAAAGGACUUCAGACAGGCCAAGGAAAAUGAAGGAGCCGUUUGAGAAGCAGUUGUCGAGUUUC ...(((((.(((.(((((((....))..........((.(((((......(....)....)))))...))..))))).)))..)))))....... ( -21.50) >DroEre_CAF1 43672 95 + 1 AAAGGCAGCGCUGUUCGAAGGAAAUUAAAAGGGAAAGGACUUCAGACAAGCCAAGGAAAAUGAAGGAGCUGUGCAAGGAGCAGUUGUCGAGUUUC ...(((((((((.(((....)))................(((((......(....)....))))).)))..(((.....)))))))))....... ( -20.20) >DroYak_CAF1 43932 95 + 1 AAAGGCAGCGUUGUUCGAAGGAAAAUAAAAGCGAAAGGACUUCAGACAGGCCAAGGAAAAUGAAGGAGCUGUGCAAGGAGCAGUUGUCGAGUCUC ...(((((((((.(((....))).......(((...((.(((((......(....)....)))))...)).)))....))).))))))....... ( -20.30) >consensus AAAGGCAGAGCUGUUCGAAGGAAAAUAAAAGGGAAAGGACUUCAGACAGGCCAAGGAAAAUGAAGGAGCCGUUUGAGGAGCAGUUGUCGAGUUUC ...(((((((((.(((....)))................((((((((.((((.............).)))))))))))))).))))))....... (-17.10 = -18.26 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:03 2006