Locus 1693

Sequence ID 3R_DroMel_CAF1
Location 4,862,672 – 4,862,767
Length 95
Max. P 0.996780
window2790 window2791

overview

Window 0

Location 4,862,672 – 4,862,767
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 91.93
Mean single sequence MFE -26.05
Consensus MFE -24.00
Energy contribution -24.33
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.24
Structure conservation index 0.92
SVM decision value 2.75
SVM RNA-class probability 0.996780
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4862672 95 + 27905053
AUUGGCAGCUGUCGAUGGGAAGACAGCUGAGAAUUCCCCGGCUCUUCACAUCGAUCGCCGAUAGCCGAUCAAUAUACACAUAAUUAAGUAAAAAC
((((((.((.(((((((.(((((..((((.(......)))))))))).))))))).)).....)))))).......................... ( -26.80)
>DroSec_CAF1 42955 95 + 1
AUUGGCAGCUGUCGAUGAGAAGACAGCUGAGAAUUCCCCGGCUCUUCACAUCGAUCGCCGAUAGCCGAUCAAUAUACACAUAAUUAAGUAAGAAG
((((((.((.(((((((.(((((..((((.(......)))))))))).))))))).)).....)))))).......................... ( -26.80)
>DroSim_CAF1 44942 95 + 1
AUUGGCAGCUGUCGAUGGGAAGACAGCUGAGAAUUCCCCGGCUCUUCACAUCGAUCGCCGAUAGCCGAUCAAUAUACACAUAAUUAAGUAAAAAG
((((((.((.(((((((.(((((..((((.(......)))))))))).))))))).)).....)))))).......................... ( -26.80)
>DroEre_CAF1 43521 95 + 1
AUUGGCAGCUGUCGAAGGGAAGACAGCUGAGAAUUUCCCGGCUCUUCGCAUCGAUCGCCGAUAGCCGAUCAAUAAACACAUAAUUAAGUAAAAAC
(((((((((((((........)))))))..........((((...(((...)))..))))...)))))).......................... ( -26.10)
>DroYak_CAF1 43781 95 + 1
AUUGGCAGCUGUCGAAGGAAAGACAGCUGAGAAUUCCCCGGCUCUUCGCAUCGAUCGCCGAUAGCCGAUCAAUAUACACAUAAUUAAGUAAAAAC
(((((((((((((........)))))))..........((((...(((...)))..))))...)))))).......................... ( -26.10)
>DroAna_CAF1 44575 95 + 1
AUUGGCAGCUGUCGGCACUGAGACAGCUGAGAAUUCCUCGGCUCCCCAUACUGAUUCCCGAUAGCCGAUCAAUAUACACAUAAUUAAGUAAAAAC
((((((.((((((((((.((.(..(((((((.....)))))))..)))...))....)))))))).).)))))...................... ( -23.70)
>consensus
AUUGGCAGCUGUCGAUGGGAAGACAGCUGAGAAUUCCCCGGCUCUUCACAUCGAUCGCCGAUAGCCGAUCAAUAUACACAUAAUUAAGUAAAAAC
(((((((((((((........)))))))..........((((...((.....))..))))...)))))).......................... (-24.00 = -24.33 +   0.33)

alignment

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secondary structure

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dotplot

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Window 1

Location 4,862,672 – 4,862,767
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 91.93
Mean single sequence MFE -27.08
Consensus MFE -25.13
Energy contribution -25.30
Covariance contribution 0.17
Combinations/Pair 1.21
Mean z-score -1.45
Structure conservation index 0.93
SVM decision value 1.19
SVM RNA-class probability 0.928885
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4862672 95 - 27905053
GUUUUUACUUAAUUAUGUGUAUAUUGAUCGGCUAUCGGCGAUCGAUGUGAAGAGCCGGGGAAUUCUCAGCUGUCUUCCCAUCGACAGCUGCCAAU
((((((((........)).(((((((((((.(....).))))))))))))))))).((((....))((((((((........))))))))))... ( -29.10)
>DroSec_CAF1 42955 95 - 1
CUUCUUACUUAAUUAUGUGUAUAUUGAUCGGCUAUCGGCGAUCGAUGUGAAGAGCCGGGGAAUUCUCAGCUGUCUUCUCAUCGACAGCUGCCAAU
((((.(((........))).((((((((((.(....).))))))))))))))....((((....))((((((((........))))))))))... ( -29.30)
>DroSim_CAF1 44942 95 - 1
CUUUUUACUUAAUUAUGUGUAUAUUGAUCGGCUAUCGGCGAUCGAUGUGAAGAGCCGGGGAAUUCUCAGCUGUCUUCCCAUCGACAGCUGCCAAU
((((((((........)))(((((((((((.(....).))))))))))))))))..((((....))((((((((........))))))))))... ( -28.00)
>DroEre_CAF1 43521 95 - 1
GUUUUUACUUAAUUAUGUGUUUAUUGAUCGGCUAUCGGCGAUCGAUGCGAAGAGCCGGGAAAUUCUCAGCUGUCUUCCCUUCGACAGCUGCCAAU
((((((((........))...(((((((((.(....).)))))))))..)))))).((........((((((((........))))))))))... ( -25.70)
>DroYak_CAF1 43781 95 - 1
GUUUUUACUUAAUUAUGUGUAUAUUGAUCGGCUAUCGGCGAUCGAUGCGAAGAGCCGGGGAAUUCUCAGCUGUCUUUCCUUCGACAGCUGCCAAU
((((((((........))...(((((((((.(....).)))))))))..)))))).((((....))((((((((........))))))))))... ( -26.50)
>DroAna_CAF1 44575 95 - 1
GUUUUUACUUAAUUAUGUGUAUAUUGAUCGGCUAUCGGGAAUCAGUAUGGGGAGCCGAGGAAUUCUCAGCUGUCUCAGUGCCGACAGCUGCCAAU
.............................(((....(((((((....(((....)))..).))))))(((((((........))))))))))... ( -23.90)
>consensus
GUUUUUACUUAAUUAUGUGUAUAUUGAUCGGCUAUCGGCGAUCGAUGUGAAGAGCCGGGGAAUUCUCAGCUGUCUUCCCAUCGACAGCUGCCAAU
((((((((........)).(((((((((((.(....).)))))))))))))))))...........((((((((........))))))))..... (-25.13 = -25.30 +   0.17)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:02 2006