Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,858,343 – 4,858,435 |
Length | 92 |
Max. P | 0.791411 |
Location | 4,858,343 – 4,858,435 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 81.40 |
Mean single sequence MFE | -20.93 |
Consensus MFE | -10.57 |
Energy contribution | -11.02 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.13 |
Mean z-score | -2.86 |
Structure conservation index | 0.50 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791411 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4858343 92 - 27905053 AAGAGCAAAAACCGAAAAAGUUUGAGUUAGUUUAAAACAAAAAGCUAAUGAAUA-AAUGCUCACCCAGAACACGCCCAGU-----UUG------CGAUUAUAAU ..(((((.....((((....)))).((((((((........)))))))).....-..)))))..........(((.....-----..)------))........ ( -15.00) >DroSec_CAF1 38857 92 - 1 AAGAGCAAAAAGCGAAAAAGUUUGAGUUAGUUUAAAACAAAAAGCUAAUGAAUA-AAUGCUCGCCCAGAGCACGCCUAGU-----UUG------CCAUUAUAAU ..(.(((((..(((.....(((((.((((((((........))))))))...))-)))((((.....)))).)))....)-----)))------))........ ( -21.40) >DroSim_CAF1 40874 92 - 1 AAGAGCAAAAAGCGAAAAAGUUUGAGUUAGUUUAAAACAAAAAGCUAAUGAAUA-AAUGCUCGCCCAGAGCACGCCCAGU-----UUG------CCAUUAUAAU ..(.(((((..(((.....(((((.((((((((........))))))))...))-)))((((.....)))).)))....)-----)))------))........ ( -21.40) >DroEre_CAF1 39125 92 - 1 AAGAGCAAAAAGCGAAAAAGUAUGAGUUAGUUUAAAACAAAAAGCUAAUGACUGAAAUGCUCGC-CAGAGCACGCCCAGU-----UUG------CUAUUAUAAU ...((((((..(((....(((....((((((((........)))))))).)))....(((((..-..))))))))....)-----)))------))........ ( -24.00) >DroYak_CAF1 39697 92 - 1 AAGAGCAAAAAGCGAAAAAGUAUGAGUUAGUUUAAAACAAAAAGCUAAUGACUAAAAUGCUUGC-CAGAGCACGCCCAGU-----UUG------CUAUUAUAAU ...((((((..(((....(((....((((((((........)))))))).)))....(((((..-..))))))))....)-----)))------))........ ( -21.50) >DroAna_CAF1 40318 101 - 1 UAAAGCAGAAAGCAUUU-UAUUUGCGAUUGUUUCAAGCAAAAAGCAAAUGAUUC-AACGCUCCA-AAAAGCACGCAUAGCAUAGCUUGGAGAGCUCAUUGAAAU ....((.....))...(-(((((((..((((.....))))...))))))))(((-((.(((((.-..((((..((...))...)))).).))))...))))).. ( -22.30) >consensus AAGAGCAAAAAGCGAAAAAGUUUGAGUUAGUUUAAAACAAAAAGCUAAUGAAUA_AAUGCUCGC_CAGAGCACGCCCAGU_____UUG______CCAUUAUAAU ...........(((...........((((((((........)))))))).........((((.....)))).)))............................. (-10.57 = -11.02 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:59 2006