Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,857,952 – 4,858,051 |
Length | 99 |
Max. P | 0.821825 |
Location | 4,857,952 – 4,858,051 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 88.45 |
Mean single sequence MFE | -21.37 |
Consensus MFE | -16.88 |
Energy contribution | -16.84 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.79 |
Structure conservation index | 0.79 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4857952 99 - 27905053 UGUUUUUGUUUUGGUUGCAAGCAGCUGAGCUAAGGAAAGACAAAAA--AAAAGAAGUAAAAACAACAAAUCACCUUUUUUUUUUGACUUUGGCUCAAUUGC .....((((.......))))((((.((((((((((........(((--((((((((.................)))))))))))..)))))))))).)))) ( -21.33) >DroSec_CAF1 38467 96 - 1 UGUUUUUGUUUUGGUUGCAAGCAGCUGAGCUAAGGAAAGACAAAA---AAAAGAAGUAAAAACAACAAAUCACCUUUU--CGUUGGCUUUGGCUCAAUUGC .....((((.......))))((((.((((((((((.....(((..---(((((....................)))))--..))).)))))))))).)))) ( -21.35) >DroSim_CAF1 40481 99 - 1 UGUUUUUGUUUUGGUUGCAAGCAGCUGAGCUAAGGAAAGACAAAAAAAAAAAGAAGUAAAAACAACAAAUCACCUUUU--CGUUGGCUUUGGCUCAAUUGC .....((((.......))))((((.((((((((((...(((.((((............................))))--.)))..)))))))))).)))) ( -19.39) >DroEre_CAF1 38759 84 - 1 UGUUGUUGUUUUGGUUGCAAGCAGCUGAGCUAAAGAA--------------AGAAGUAAAAACAAAAAAUCACCUUUU---UUUGGCUUUGGCUCAAUUGC .((((((((.......)).))))))((((((((((..--------------...........(((((((......)))---)))).))))))))))..... ( -21.24) >DroYak_CAF1 39309 91 - 1 UGUUUUUGUUAUGGUUGCAAGCAGCUGAGCUAAAGAAA----AAA---AGAAGAAGUAAAAACAACAAAUCACCUUUU---UUUGGCUUUGGCUCAAUUGC .....((((.......))))((((.((((((((((...----(((---(((((....................)))))---)))..)))))))))).)))) ( -23.55) >consensus UGUUUUUGUUUUGGUUGCAAGCAGCUGAGCUAAGGAAAGACAAAA___AAAAGAAGUAAAAACAACAAAUCACCUUUU___UUUGGCUUUGGCUCAAUUGC .....((((.......))))((((.((((((((((....................((....)).........((..........)))))))))))).)))) (-16.88 = -16.84 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:58 2006