Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 825,582 – 825,696 |
Length | 114 |
Max. P | 0.964836 |
Location | 825,582 – 825,696 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.30 |
Mean single sequence MFE | -35.60 |
Consensus MFE | -28.38 |
Energy contribution | -28.22 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.11 |
Mean z-score | -2.27 |
Structure conservation index | 0.80 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964836 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 825582 114 + 27905053 GGCUGGUGUGGGGGA------AAGGGAAAGGGGAGUGGGUGCCUCGCCCGCUGACUUUUCCUUUGUGGCUUUAAUGAAAGUAAUUUAUUAAGUAAUUUCUAAGCUUUUAGUCGUGACGCU ((((((.((..((((------((((((((((..((((((((...))))))))..))))))))))...((((.((((((.....))))))))))...))))..))..))))))........ ( -39.00) >DroSec_CAF1 7873 120 + 1 GACUGGUGUGGGGGAAAAAGAAAGGGAAAGGGGAGUGGGUGCCUCGCCCGCUGACUUUUCCUUUGUGGCUUUAAUGAAAGUAAUUUAUUAAGUAAUUUCUAAGCUUUUAGUCGUGACGCU ((((((.((..(((((.....((((((((((..((((((((...))))))))..))))))))))...((((.((((((.....))))))))))..)))))..))..))))))........ ( -40.60) >DroSim_CAF1 5052 120 + 1 GACUGGCGUGGGGGAAAAAGAAAGGGAAAGGGGAGUGGGUGCCUCGCCCGCUGACUUUUCCUUUGUGGCUUUAAUGAAAGUAAUUUAUUAAGUAAUUUCUAAGCUUUUAGUCGUGACGCU (((((((.(((..(.......((((((((((..((((((((...))))))))..))))))))))...((((.((((((.....))))))))))..)..))).)))...))))........ ( -40.30) >DroEre_CAF1 9560 113 + 1 GGA------AAGG-GAAGGGAAGGGGAAUGGGAAGUGGGUGCCCUGUCCGCUGACUUUUCCUUUGUGGCUUUAAUGAAAGUAAUUUAUUAAGUAAUUUCUAAGCUUUUAGUCGUGACGCU ..(------((((-(((((..((.(((..(((.........)))..))).))..))))))))))((.((.....(((((((...(((..((....))..))))))))))...)).))... ( -31.20) >DroYak_CAF1 8370 108 + 1 GAA------AGGG------GAAAGGGAAUGGGAAGUGGGUGACCUGUCCGCUGACUUUUCCUUUGUGACUUUAAUGAAAGUAAUUUAUUAAGUAAUUUCUAAGCUUUUAGUCGUGACGCU ...------((((------((((((..(..(((...((....))..)))..)..))))))))))((.((.....(((((((...(((..((....))..))))))))))...)).))... ( -26.90) >consensus GACUGG_GUGGGGGAAA__GAAAGGGAAAGGGGAGUGGGUGCCUCGCCCGCUGACUUUUCCUUUGUGGCUUUAAUGAAAGUAAUUUAUUAAGUAAUUUCUAAGCUUUUAGUCGUGACGCU .....................((((((((((..(((((((.....)))))))..))))))))))((.((.....(((((((.....................)))))))...)).))... (-28.38 = -28.22 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:42 2006