Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,837,754 – 4,837,846 |
Length | 92 |
Max. P | 0.669032 |
Location | 4,837,754 – 4,837,846 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 79.81 |
Mean single sequence MFE | -27.72 |
Consensus MFE | -20.34 |
Energy contribution | -19.57 |
Covariance contribution | -0.78 |
Combinations/Pair | 1.21 |
Mean z-score | -1.27 |
Structure conservation index | 0.73 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669032 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4837754 92 + 27905053 AC--UCUCCCUUACCGUCACCUGCUGGCGAUCCAACUGCAUCUGCAUCUGUAGCUGCUGCAGCUGAGAUGUGGGCGGUCCGCCCCUCCGCACGC ..--.................(((.((((..((..(..(((((.((.((((((...)))))).)))))))..)..))..)))).....)))... ( -29.50) >DroVir_CAF1 20474 86 + 1 --------GCUUACCGUCAACUGUUGCCGAUCCAUUUGCAUUUGCAUCUGCAAUUGUUGCAACUGCGAUGUUGGUGGAACGCCACGUCUGACGC --------......(((((..(((.((.(.(((((..(((((.(((..((((.....))))..))))))))..))))).))).)))..))))). ( -29.30) >DroSec_CAF1 18656 94 + 1 ACCCUCUCCCUUACCGUCACCUGCUGGCGAUCCAACUGCAUCUGCAUCUGUAGCUGCUGCAGCUGAGAUGUGGGCGGUCCGCCCCUCCGCACCC .....................(((.((((..((..(..(((((.((.((((((...)))))).)))))))..)..))..)))).....)))... ( -29.50) >DroSim_CAF1 20242 94 + 1 ACCCUCUCCCUUACCGUCACCUGCUGGCGAUCCAACUGCAUCUGCAUCUGUAGCUGCUGCAGCUGAGAUGUGGGCGGUCCGCCCCUCCGCACGC .....................(((.((((..((..(..(((((.((.((((((...)))))).)))))))..)..))..)))).....)))... ( -29.50) >DroMoj_CAF1 19268 86 + 1 --------GCUUACCGUCAACUGUUGCCGAUCCAUUUGCAUUUGCAUCUGCAAUUGUUGCAAUUGCGAUGUUGGUGGAACGCCACGUCUAACAC --------.......((....(((.((.(.(((((..(((((.(((..((((.....))))..))))))))..))))).))).)))....)).. ( -23.10) >DroAna_CAF1 18529 92 + 1 GC--UAUCCCUUACCGUCACCUGCUGGCGAUCCAACUGCAUCUGCAUCUGUAGCUGUUGCAGCUGCGACGUAGGCGGACCACCCCUCCUCACUC ..--..((((((((.(((...(((..(((.......)))....)))...(((((((...))))))))))))))).)))................ ( -25.40) >consensus AC__UCUCCCUUACCGUCACCUGCUGGCGAUCCAACUGCAUCUGCAUCUGUAGCUGCUGCAGCUGAGAUGUGGGCGGACCGCCCCUCCGCACGC ..............(((((.....)))))(((((.(((((.((((....))))....))))).)).)))..(((((...))))).......... (-20.34 = -19.57 + -0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:56 2006