Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,834,386 – 4,834,484 |
Length | 98 |
Max. P | 0.664927 |
Location | 4,834,386 – 4,834,484 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 76.48 |
Mean single sequence MFE | -26.37 |
Consensus MFE | -16.13 |
Energy contribution | -17.22 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.29 |
Mean z-score | -1.45 |
Structure conservation index | 0.61 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4834386 98 + 27905053 UGGGGAAGACUUUUGUUUAUUUCCGAACUUUUUUGUUUAUUU-------UGCGUAGGUGCGCAAGCAAUAUGUGCUCUAUUUGGAGCGCCAGCUGCAGGAGAAUG .((..(((((....)))).)..))((((......)))).(((-------((((((..(((....))).)))(((((((....))))))).....))))))..... ( -29.20) >DroVir_CAF1 16878 87 + 1 U----AC---AUAUGUAUAUUUU----GUUUU--AAAUAA-----CAAUUACGCAGGUGCGUGAACAAUAUGUACGCUAUUUGGAGCGCCAGCUACAGGAGAACG (----((---((((((.....((----(((..--....))-----)))((((((....)))))))).)))))))..((.((((.(((....))).)))))).... ( -19.50) >DroSec_CAF1 15303 98 + 1 UGGGGAAGACUUUUGUUUAUUUCCUAACUUUUUUGUUUAUGA-------UGCGUAGGUGCGCAAGCAAUAUGUGCUCUAUUUGGAGCGCCAGUUGCAGGAGAAUG ((((((((((....)))..)))))))..((((((((...((.-------.(((((..(((....))).)))))(((((....)))))..))...))))))))... ( -29.90) >DroSim_CAF1 15769 98 + 1 UGGGGAAAACUUUUGUUUAUUUCCUAACAUUUUUGUUUAUUA-------UGCGUAGGUGCGCACGCAAUAUGUGCUCUAUUUGGAGCGCCAGCUGCAGGAGAAUG ((((((((((....)))..))))))).(((((((........-------(((((....))))).(((....(((((((....)))))))....)))..))))))) ( -28.80) >DroEre_CAF1 15364 101 + 1 UGUGGAAG-CUUUUGGCA-GUUCCUAACUU--UUGUUUAUUUACGAAACUGCUUAGGUGCAUAAGCAAUAUGUGCUCUAUUUGGAGCGCCAGCUGCAGGAGAAUG ........-((((((.((-(((......((--((((......)))))).((((((......))))))....(((((((....))))))).))))))))))).... ( -27.40) >DroYak_CAF1 15471 101 + 1 UGUGAAAG-CGUUUGGCU-AUUCCUAACUU--UUGUUUAUUUACAUAACUGCGUAGGUACGCAAGCAAUAUGUGCUAUAUUUGGAGCGCCAGCUGCAGGAGAAUG .......(-((.(((((.-.((((......--.(((.(((((((........))))))).)))((((.....))))......)))).))))).)))......... ( -23.40) >consensus UGGGGAAG_CUUUUGUUUAUUUCCUAACUUUUUUGUUUAUUU_______UGCGUAGGUGCGCAAGCAAUAUGUGCUCUAUUUGGAGCGCCAGCUGCAGGAGAAUG ...................((((((........................(((((....))))).(((....(((((((....)))))))....)))))))))... (-16.13 = -17.22 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:54 2006