Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,827,016 – 4,827,123 |
Length | 107 |
Max. P | 0.846415 |
Location | 4,827,016 – 4,827,123 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 80.27 |
Mean single sequence MFE | -20.42 |
Consensus MFE | -15.54 |
Energy contribution | -16.06 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.12 |
Mean z-score | -1.79 |
Structure conservation index | 0.76 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846415 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4827016 107 + 27905053 A-----AUUCACAAUCUGUUGCAAUAU---GGCUUAAUGUUCAAGGCAUUGCAAAUAAGUAAUUAACGCGGUUCUUGCAUCGUGUAUCUCUUAUUUGCAAUUGUUUUUAUUUUUU .-----............(((.(((((---......))))))))(((((((((((((((..((..(((((((......)))))))))..))))))))))).)))).......... ( -23.20) >DroSec_CAF1 7944 112 + 1 AAUUGAAUUCACAAUUUGUUGCAAUAU---GGCUUAAUCUUCCAGGCAUUGCAAAUAUAUAAUUAACGCGUUUCUUACAUCGCGUAUCUCUUAUUUGCAAUUGUUUUUAUUUUUU ...((((..((........(((....(---((.........))).)))(((((((((........(((((..........)))))......))))))))).))..))))...... ( -18.64) >DroSim_CAF1 7996 107 + 1 A-----AUUCACAAUUUGUUGCAAUAU---GGCUUAAUCUUCCAGGCAUUGCAAAUAUAUAAUUAACGCGGUUCUUGCAUCGCGUAUCUCUUAUUUGCAAUUGUUUUUAUUUUUU .-----....((((.....(((....(---((.........))).)))(((((((((........(((((((......)))))))......)))))))))))))........... ( -20.94) >DroEre_CAF1 7917 98 + 1 ------------AAUUUUUUGCAAUUUGUUUGCUUAAUGUUCAAGGCAUUACGAAUAAAUAAUCAACGCGGUUCUUGCAAAGCCUAUCUCUUAUUUGCAAUUGUUU-----UCUU ------------......((((((((((((((..((((((.....))))))))))))))).........((((.......))))...........)))))......-----.... ( -15.90) >DroYak_CAF1 7966 100 + 1 A-----AAU--GAAUUUUUUGCAAUGU---AGCUUUAUAUUUAGGGCAUUGCAAAUAAAUAAUCAACGCGGUUCUUGCAUCGCGUAUCUUCUAUUUGCAAUUGUCU-----UCUU .-----..(--((((.....((.....---.)).....)))))((((((((((((((........(((((((......)))))))......))))))))).)))))-----.... ( -23.44) >consensus A_____AUUCACAAUUUGUUGCAAUAU___GGCUUAAUCUUCAAGGCAUUGCAAAUAAAUAAUUAACGCGGUUCUUGCAUCGCGUAUCUCUUAUUUGCAAUUGUUUUUAUUUUUU ....................(((((......((((........))))..((((((((........(((((((......)))))))......)))))))))))))........... (-15.54 = -16.06 + 0.52)
Location | 4,827,016 – 4,827,123 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 80.27 |
Mean single sequence MFE | -18.18 |
Consensus MFE | -13.72 |
Energy contribution | -14.36 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.17 |
Mean z-score | -1.57 |
Structure conservation index | 0.75 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683607 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4827016 107 - 27905053 AAAAAAUAAAAACAAUUGCAAAUAAGAGAUACACGAUGCAAGAACCGCGUUAAUUACUUAUUUGCAAUGCCUUGAACAUUAAGCC---AUAUUGCAACAGAUUGUGAAU-----U ...........(((((((((((((((.(((....(((((.......))))).))).))))))))).(((.(((((...))))).)---)).........))))))....-----. ( -20.50) >DroSec_CAF1 7944 112 - 1 AAAAAAUAAAAACAAUUGCAAAUAAGAGAUACGCGAUGUAAGAAACGCGUUAAUUAUAUAUUUGCAAUGCCUGGAAGAUUAAGCC---AUAUUGCAACAAAUUGUGAAUUCAAUU ...........(((((((((((((.((...(((((.(......).)))))...))...)))))))..(((.(((.........))---)....)))...)))))).......... ( -18.30) >DroSim_CAF1 7996 107 - 1 AAAAAAUAAAAACAAUUGCAAAUAAGAGAUACGCGAUGCAAGAACCGCGUUAAUUAUAUAUUUGCAAUGCCUGGAAGAUUAAGCC---AUAUUGCAACAAAUUGUGAAU-----U ...........(((((((((((((.((...(((((..........)))))...))...)))))))..(((.(((.........))---)....)))...))))))....-----. ( -18.40) >DroEre_CAF1 7917 98 - 1 AAGA-----AAACAAUUGCAAAUAAGAGAUAGGCUUUGCAAGAACCGCGUUGAUUAUUUAUUCGUAAUGCCUUGAACAUUAAGCAAACAAAUUGCAAAAAAUU------------ ....-----......((((((.....((((((.(..(((.......)))..).))))))........(((.((((...)))))))......))))))......------------ ( -12.10) >DroYak_CAF1 7966 100 - 1 AAGA-----AGACAAUUGCAAAUAGAAGAUACGCGAUGCAAGAACCGCGUUGAUUAUUUAUUUGCAAUGCCCUAAAUAUAAAGCU---ACAUUGCAAAAAAUUC--AUU-----U ..((-----(....((((((((((((.((((((((..........)))))..))).))))))))))))..............((.---.....))......)))--...-----. ( -21.60) >consensus AAAAAAUAAAAACAAUUGCAAAUAAGAGAUACGCGAUGCAAGAACCGCGUUAAUUAUUUAUUUGCAAUGCCUUGAACAUUAAGCC___AUAUUGCAACAAAUUGUGAAU_____U ..............((((((((((((.((((((((.(......).)))))..))).))))))))))))..............((.........)).................... (-13.72 = -14.36 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:52 2006