| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,826,533 – 4,826,642 |
| Length | 109 |
| Max. P | 0.982539 |
| Location | 4,826,533 – 4,826,642 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 88.98 |
| Mean single sequence MFE | -25.46 |
| Consensus MFE | -20.42 |
| Energy contribution | -20.78 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.982539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4826533 109 - 27905053 ACGCCUCAAGACUUCGGACUACUUUGCUCAUAUGCAUAAAUUGCAAGCGAAUGUUCGAAUAAAUCGUUUAGAUUUGCUUAUUAAGUGCUAAGAGAUUUCUCGGAUGUAU (((((..(((..(((((((...((((((....((((.....)))))))))).)))))))((((((.....)))))))))............(((....))))).))).. ( -24.80) >DroSec_CAF1 7471 109 - 1 CCGCUUCAAGACUUCGGACUAUUUUGCUCAUAUGCAUAAAUUGCAAGCGAAUGUCCGAAUAAAUCGUUUAAAUUUGCUUAUAAAGUGCUAAGAGAUUUCUCUGCUGCAU ..((....(((((((((((...((((((....((((.....)))))))))).)))))))......))))......)).......((((..((((....))))...)))) ( -28.40) >DroSim_CAF1 7510 109 - 1 CCGCUUCAAGACUUCGGACUACUUUGCUCAUAUGCAUAAAUUGCAAGCGAAUGUCCGAAUAAAUCGUUUAAAUUUGCUUAUUAAGUGCUAAGAGAUUUCUCUGCUGCAU ..((....(((((((((((...((((((....((((.....)))))))))).)))))))......))))......)).......((((..((((....))))...)))) ( -27.70) >DroEre_CAF1 7537 108 - 1 CUGCUUCAAAACUUCGGUUUACUUUGCUCAUAUGCAUAAAUUGCAUGCAAAUGUCC-AAUAAAUCGUUUAUAUUUGCCUAAUAUGUGCUAAGAGAUUUCUCUUUUGCAU .(((....((((....)))).....((.((((((((.....)))..((((((((..-(((.....))).))))))))...))))).)).(((((....)))))..))). ( -23.40) >DroYak_CAF1 7503 108 - 1 CUGCUUCCAAACUUCGGUUUACUUUGCCCAUAUGCAUAAAUUGCAUGCAAAUGUCC-AAUAUAUCGUUUAUAUUUGCUUAAUAUGUGCUAAGAGAUUUCUCUUUUGCAU .(((....((((....)))).....((.((((((((.....)))..((((((((..-(((.....))).))))))))...))))).)).(((((....)))))..))). ( -23.00) >consensus CCGCUUCAAGACUUCGGACUACUUUGCUCAUAUGCAUAAAUUGCAAGCGAAUGUCCGAAUAAAUCGUUUAAAUUUGCUUAUUAAGUGCUAAGAGAUUUCUCUGCUGCAU ..((....(((((((((((...((((((....((((.....)))))))))).)))))))......))))......)).......((((..((((....))))...)))) (-20.42 = -20.78 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:50 2006