Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,815,782 – 4,815,879 |
Length | 97 |
Max. P | 0.998318 |
Location | 4,815,782 – 4,815,879 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 91.12 |
Mean single sequence MFE | -24.52 |
Consensus MFE | -22.30 |
Energy contribution | -21.50 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.18 |
Mean z-score | -2.14 |
Structure conservation index | 0.91 |
SVM decision value | 3.07 |
SVM RNA-class probability | 0.998318 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4815782 97 + 27905053 ACAAGCAAAUCACUAGUACAGCAAACAGCAGCGUUGUAAACAGCUCCA---CGACAGCAUCUCCAGCUGCGACAGCGACGGCAACGCCUAGCAACAAUCU ............((((....((.....)).(((((((.....(((...---((.((((.......))))))..)))....)))))))))))......... ( -24.70) >DroSec_CAF1 5303 97 + 1 ACAAGCAAAUCACUAGUACAGCAAACAGCAGCGUUGUUAACAGCUCCA---CGACAGCAUCUCCAGCUGCGACAGCGACGGCAACGCCUAGCAACAAUCU ............((((....((.....)).((((((((....(((...---((.((((.......))))))..)))...))))))))))))......... ( -24.30) >DroSim_CAF1 6735 97 + 1 ACAAGCAAAUCACUAGUACAGCAAACAGCAGCGUUGUUAACAGCUCCA---CGACAGCAUCUCCAGCUGCGACAGCGACGGCAACGCCUAGCAACAAUCU ............((((....((.....)).((((((((....(((...---((.((((.......))))))..)))...))))))))))))......... ( -24.30) >DroEre_CAF1 5153 100 + 1 ACAAGCAGAUCCCUAGUACCGCCAACAGCAGCGUUGUAAAAAGCUCCACAACGACAGCAGCUCCAGCUGCGACAGCGACGACAACGCCUGGUAACAAUCU ......((((......((((((.....)).(((((((.....((((......))..(((((....)))))....))....)))))))..))))...)))) ( -25.90) >DroYak_CAF1 5137 100 + 1 ACAAAUCAAUCACUAGUACAGUCAACAGCAGCGUUGUAAACAGCUCCACAACGACAGCAGCUCCAGCUGCGACAGCGACGACAGCGCCUGGCAACAAUCU ............((((....(((.......(((((((..........)))))).).(((((....)))))))).(((.(....))))))))......... ( -23.40) >consensus ACAAGCAAAUCACUAGUACAGCAAACAGCAGCGUUGUAAACAGCUCCA___CGACAGCAUCUCCAGCUGCGACAGCGACGGCAACGCCUAGCAACAAUCU ............((((....((.....)).(((((((.....(((......((.((((.......))))))..)))....)))))))))))......... (-22.30 = -21.50 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:47 2006