Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 824,916 – 825,076 |
Length | 160 |
Max. P | 0.998547 |
Location | 824,916 – 825,036 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.58 |
Mean single sequence MFE | -36.82 |
Consensus MFE | -30.02 |
Energy contribution | -30.94 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.06 |
Mean z-score | -3.14 |
Structure conservation index | 0.82 |
SVM decision value | 3.14 |
SVM RNA-class probability | 0.998547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 824916 120 + 27905053 GGAGUGCUUUUCCGGUGACCCACUGGAGACGCUUCUACCCACUUAAGCUCCAAGAAUACCAAUAUUUUCCUUGGCCGUUUUUUUGGCCAAUAAAUCAUGUGGCACAUUGUGUCAGCUCUU (((((.....(((((((...)))))))(((((......((((..........((((((....))))))..(((((((......)))))))........))))......))))).))))). ( -35.40) >DroSec_CAF1 7223 120 + 1 GGAGUGCUUUUCCGGUGACCCACUGGAGACGCUUCUACCCACUCAAGCUGCAAGAAUACCAAUAUUUUCCUUGGCCGUUUUUUUGGCCAAUAAAUCAUGUGGCACAUUGUGUGUGCUCUU (((((((.(((((((((...))))))))).)).......(((.(((((..((((((((....))))))..(((((((......))))))).......))..))...))).))).))))). ( -38.30) >DroSim_CAF1 4396 120 + 1 GGAGUGCUUUUCCGGUGACCCACUGGAGACGCUUCUACCCACUCAAGCUGCAAGAAUACCAAUAUUUUCCUUGGCCGUUUUUUUGGCCAAUAAAUCAUGUGGCACAUUGUGUGUGCUCUU (((((((.(((((((((...))))))))).)).......(((.(((((..((((((((....))))))..(((((((......))))))).......))..))...))).))).))))). ( -38.30) >DroEre_CAF1 7677 120 + 1 GGAGUGUUUUUCCGGUGACCCACUGGAGAUGCUCCAACCCACUUAGGCUGCAAGAAUACCAAUAUUUUCCUUGGCCUUUUUUUUGGCCAAUAAAUCUUGUGGCACAUUGUGUAUGCUCUU ((((((((..(((((((...)))))))))))))))....(((....((..((((((((....))).....((((((........))))))....)))))..)).....)))......... ( -40.20) >DroYak_CAF1 7317 109 + 1 GGAGUGUUUUUC--------UACCGGAGAUGCUCCAACCCACUUAAGCUGCAAGAAUACCAAUUUUUUCC-UGGCCUUU--UUUGGCCAAUAAAUCUUGUGGCACAUUGUGUACCCUCUU (((((((((((.--------....)))))))))))....(((....((..(((((..........(((..-(((((...--...)))))..))))))))..)).....)))......... ( -31.90) >consensus GGAGUGCUUUUCCGGUGACCCACUGGAGACGCUUCUACCCACUUAAGCUGCAAGAAUACCAAUAUUUUCCUUGGCCGUUUUUUUGGCCAAUAAAUCAUGUGGCACAUUGUGUAUGCUCUU ((((((..(((((((((...)))))))))))))))....(((....((..((((((((....))))))..((((((........)))))).......))..)).....)))......... (-30.02 = -30.94 + 0.92)
Location | 824,956 – 825,076 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.50 |
Mean single sequence MFE | -25.63 |
Consensus MFE | -17.57 |
Energy contribution | -17.57 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.09 |
Mean z-score | -2.52 |
Structure conservation index | 0.69 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.783979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 824956 120 + 27905053 ACUUAAGCUCCAAGAAUACCAAUAUUUUCCUUGGCCGUUUUUUUGGCCAAUAAAUCAUGUGGCACAUUGUGUCAGCUCUUUUCUUGUCUUUUCUUUGAGAUUCUGUUGUUUGUUCUCUGU ...(((((..((((((..............(((((((......))))))).........((((((...))))))......))))))((((......)))).......)))))........ ( -23.90) >DroSec_CAF1 7263 120 + 1 ACUCAAGCUGCAAGAAUACCAAUAUUUUCCUUGGCCGUUUUUUUGGCCAAUAAAUCAUGUGGCACAUUGUGUGUGCUCUUUUCUUGUCUUUUCUUCGGGAUUCUUUUGUUUGUCCUCUGU ...(((((.(((((((..............(((((((......)))))))..........(((((((...)))))))...)))))))...(((....))).......)))))........ ( -29.30) >DroSim_CAF1 4436 120 + 1 ACUCAAGCUGCAAGAAUACCAAUAUUUUCCUUGGCCGUUUUUUUGGCCAAUAAAUCAUGUGGCACAUUGUGUGUGCUCUUUUCUUGUCUGUUCUUCGGGAUUCUUUUGUUUGUCCUCUGU ...(((((.(((((((..............(((((((......)))))))..........(((((((...)))))))...)))))))..((((....))))......)))))........ ( -30.20) >DroEre_CAF1 7717 120 + 1 ACUUAGGCUGCAAGAAUACCAAUAUUUUCCUUGGCCUUUUUUUUGGCCAAUAAAUCUUGUGGCACAUUGUGUAUGCUCUUUUAUUUUCUUUUCUUUGAGAUUCUUUUGUUUGCCCUCAGU (((.((((..((((((((....))).....((((((........))))))....)))))..)).......(((.((........((((........)))).......)).))).)).))) ( -23.66) >DroYak_CAF1 7349 112 + 1 ACUUAAGCUGCAAGAAUACCAAUUUUUUCC-UGGCCUUU--UUUGGCCAAUAAAUCUUGUGGCACAUUGUGUACCCUCUU-----UUCCUUUCUUUAAGAUUCUUUUGUUUGCCCUCAUU .(((((((..(((((..........(((..-(((((...--...)))))..))))))))..))((.....))........-----.........)))))..................... ( -21.10) >consensus ACUUAAGCUGCAAGAAUACCAAUAUUUUCCUUGGCCGUUUUUUUGGCCAAUAAAUCAUGUGGCACAUUGUGUAUGCUCUUUUCUUGUCUUUUCUUUGAGAUUCUUUUGUUUGUCCUCUGU ...(((((...((((((.(((.........((((((........)))))).........)))(((...)))............................))))))..)))))........ (-17.57 = -17.57 + 0.00)
Location | 824,956 – 825,076 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.50 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -18.50 |
Energy contribution | -18.58 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.20 |
Mean z-score | -2.94 |
Structure conservation index | 0.71 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946484 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 824956 120 - 27905053 ACAGAGAACAAACAACAGAAUCUCAAAGAAAAGACAAGAAAAGAGCUGACACAAUGUGCCACAUGAUUUAUUGGCCAAAAAAACGGCCAAGGAAAAUAUUGGUAUUCUUGGAGCUUAAGU ...((((.............))))..................(((((..((....((((((.(((.(((.((((((........))))))..))).)))))))))...)).))))).... ( -25.42) >DroSec_CAF1 7263 120 - 1 ACAGAGGACAAACAAAAGAAUCCCGAAGAAAAGACAAGAAAAGAGCACACACAAUGUGCCACAUGAUUUAUUGGCCAAAAAAACGGCCAAGGAAAAUAUUGGUAUUCUUGCAGCUUGAGU ........(((.(..((((((.((((................(.(((((.....))))))......(((.((((((........)))))).)))....)))).))))))...).)))... ( -25.60) >DroSim_CAF1 4436 120 - 1 ACAGAGGACAAACAAAAGAAUCCCGAAGAACAGACAAGAAAAGAGCACACACAAUGUGCCACAUGAUUUAUUGGCCAAAAAAACGGCCAAGGAAAAUAUUGGUAUUCUUGCAGCUUGAGU ........(((.(..((((((.((((................(.(((((.....))))))......(((.((((((........)))))).)))....)))).))))))...).)))... ( -25.60) >DroEre_CAF1 7717 120 - 1 ACUGAGGGCAAACAAAAGAAUCUCAAAGAAAAGAAAAUAAAAGAGCAUACACAAUGUGCCACAAGAUUUAUUGGCCAAAAAAAAGGCCAAGGAAAAUAUUGGUAUUCUUGCAGCCUAAGU (((..((((......((((((..(((................(.(((((.....))))))......(((.((((((........)))))).)))....)))..))))))...)))).))) ( -26.70) >DroYak_CAF1 7349 112 - 1 AAUGAGGGCAAACAAAAGAAUCUUAAAGAAAGGAA-----AAGAGGGUACACAAUGUGCCACAAGAUUUAUUGGCCAAA--AAAGGCCA-GGAAAAAAUUGGUAUUCUUGCAGCUUAAGU ..((((.((...........((((......)))).-----((((((((((.....))))).(((..(((.((((((...--...)))))-)..)))..)))...)))))))..))))... ( -26.30) >consensus ACAGAGGACAAACAAAAGAAUCUCAAAGAAAAGACAAGAAAAGAGCACACACAAUGUGCCACAUGAUUUAUUGGCCAAAAAAACGGCCAAGGAAAAUAUUGGUAUUCUUGCAGCUUAAGU ...............((((((.((((................(.(((((.....))))))......(((.((((((........)))))).)))....)))).))))))........... (-18.50 = -18.58 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:41 2006