Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,807,577 – 4,807,669 |
Length | 92 |
Max. P | 0.917364 |
Location | 4,807,577 – 4,807,669 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 77.86 |
Mean single sequence MFE | -24.03 |
Consensus MFE | -13.35 |
Energy contribution | -13.71 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.09 |
Mean z-score | -2.22 |
Structure conservation index | 0.56 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917364 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4807577 92 - 27905053 CAUAAACUAUCAGC---U---------CGACUGGAUUUACUCACCCACAAACAUAUCGCCCACGUGAGUGUCGGUGUACCGGGUGGGAAUCAUUCUACUGUCCA ..............---.---------.(((((((....(((((((......((((((..(((....))).))))))...)))))))......))))..))).. ( -23.70) >DroPse_CAF1 2908 99 - 1 CA----UUAUUAACAUAUAGAGGUAUACAAGUAUA-UAACAUACCCACAAACAUAUCGCCCACGUGAGUGUCCGUAUAUCUGGUGGGAAUCAUUCUACUGUCCA ..----...........((((((((((....))))-)......(((((....((((((..(((....)))..)).))))...))))).....)))))....... ( -22.90) >DroEre_CAF1 940 92 - 1 CAUAUAUUAUCUAC---G---------CAACUGGAGUUACUCACCCACAAACAUAUCGCCCACGUGAGUGUCGGUGUACCGGGUGGGAAUCAUUCUACUGUCCA ..............---(---------((..((((((..(((((((......((((((..(((....))).))))))...)))))))....)))))).)))... ( -23.90) >DroYak_CAF1 869 92 - 1 CAUAAAUUAUCUAC---U---------CGACUAGAGUUACUCACCCACAAACAUAUCGCCCACGUGAGUGUCGGUGUACCGGGUGGGAAUCAUUCUACUGUCCA ..............---.---------.(((((((((..(((((((......((((((..(((....))).))))))...)))))))....))))))..))).. ( -25.80) >DroAna_CAF1 1053 92 - 1 UAUAUAUAA-CAAC---UA--------UGACUUCAUAGACUUACCCACAAACAUGUCACCCACAUGGGUAUCCGUGUAGCGGGUGGGAAUCAUUCUACUGUCCA .........-...(---((--------((....))))).(((((((.(..(((((..((((....))))...))))).).)))))))................. ( -25.00) >DroPer_CAF1 1114 99 - 1 CA----UUAUUAACAUAUAGAGGUAUACAAGUAUA-UAACAUACCCACAAACAUAUCGCCCACGUGAGUGUCCGUAUAUCUGGUGGGAAUCAUUCUACUGUCCA ..----...........((((((((((....))))-)......(((((....((((((..(((....)))..)).))))...))))).....)))))....... ( -22.90) >consensus CAUA_AUUAUCAAC___U_________CAACUAGA_UUACUCACCCACAAACAUAUCGCCCACGUGAGUGUCCGUGUACCGGGUGGGAAUCAUUCUACUGUCCA ...........................................(((((........(((.(((....)))...)))......)))))................. (-13.35 = -13.71 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:43 2006