Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,804,291 – 4,804,394 |
Length | 103 |
Max. P | 0.933942 |
Location | 4,804,291 – 4,804,394 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 86.11 |
Mean single sequence MFE | -20.71 |
Consensus MFE | -15.22 |
Energy contribution | -15.82 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.41 |
Structure conservation index | 0.73 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4804291 103 + 27905053 UU-----UCUCUUUUUCGUUUGCCUUACAGUGAUCAUUGUCAUGCAGGCGAUUCUGCUUCAUUAUUUCGCCUGAUGUACCCACGCUUCUCCCCACCACUCCCCCAACU ..-----..........((.((...(((((((((....))))).(((((((...............))))))).))))..)).))....................... ( -16.36) >DroSec_CAF1 39514 103 + 1 UU-----UCUCUUUUUCGUUUGGCUUACAGUAAUCAUUGUCAUGCAGGCGAUUCUGCUUCAUUAUUUCGGCUGCUGUACCCACGCUUCCUCCCCAGAACCCCCCAGCC ..-----..........((.(((..(((((((..(...((.(((.(((((....)))))))).))...)..))))))).))).))....................... ( -18.60) >DroSim_CAF1 35696 103 + 1 UU-----UCUCUUUUUCGUUUGGCUUACAGUAAUCAUUGUCAUGCAGGCGAUUCUGCUUCAUUAUUUCGCCUGCUGUACCCACGCUUCCUCCCCAGAAUCCCCCAACU ..-----...........(((((...(((((....)))))...((((((((...............))))))))..................)))))........... ( -19.16) >DroEre_CAF1 40513 103 + 1 UUUUGUUUUUCUUUUUGGUUUGGCUUACAGUAAUCAUUGUCAUGCAGGCGAUUCUGCUUCAUUAUUUCGCCUGCUGUACCCACGCUGCUUGCCA----UC-CACAACU ...............(((..((((...((((.......((((.((((((((...............)))))))))).))....))))...))))----.)-))..... ( -27.46) >DroYak_CAF1 41712 100 + 1 UUUU---CUUCUUUUUAGUUUGGCCUACAGUAAUCAUUGUCAUGCAGGCGAUUCUGCUUCAUUAUUUCGCCUGCCGUACCCACGCUUCUUGCCA----UC-CGCAACU ....---..........(..((((..(((((....)))))...((((((((...............))))))))................))))----..-)...... ( -21.96) >consensus UU_____UCUCUUUUUCGUUUGGCUUACAGUAAUCAUUGUCAUGCAGGCGAUUCUGCUUCAUUAUUUCGCCUGCUGUACCCACGCUUCUUCCCA__A_UCCCCCAACU .................((.(((...(((((....)))))...((((((((...............)))))))).....))).))....................... (-15.22 = -15.82 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:36 2006