Locus 1674

Sequence ID 3R_DroMel_CAF1
Location 4,803,618 – 4,803,732
Length 114
Max. P 0.975275
window2763

overview

Window 3

Location 4,803,618 – 4,803,732
Length 114
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 89.47
Mean single sequence MFE -22.44
Consensus MFE -18.98
Energy contribution -18.66
Covariance contribution -0.32
Combinations/Pair 1.07
Mean z-score -2.01
Structure conservation index 0.85
SVM decision value 1.75
SVM RNA-class probability 0.975275
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4803618 114 - 27905053
GUAUUCU-UAAGCUAUUGUGCUUCUACCUCAACAAUAAGGCCUUCGAUAUGAUGUCAUAUAGUAUUUGUCUUGGCCAACUUAUGAAUACACAUAC----ACACUACUACAUUUAAUUUU
((((((.-((((.((((((............)))))).((((...((((.((((........))))))))..))))..)))).))))))......----.................... ( -21.90)
>DroSec_CAF1 38858 109 - 1
GUAUUCUUUAAGCUAUUGUGCUUCUACCUCAACAAUAAGGCCUUCGAUAUGAUGUCAUAUGGUAUUUGUCUUGGCCAACUUAUGAAUACACAGAC----ACA------CAUUUCAUUUU
((((((..((((.((((((............)))))).((((...((((.(((..(....)..)))))))..))))..)))).))))))......----...------........... ( -23.60)
>DroSim_CAF1 35053 109 - 1
GUAUUCUUUAAGCUAUUGUGCUUCUACCUCAACAAUAAGGCCUUCGAUAUGAUGUCAUAUGGUAUUUGUCUUGGCCAACUUAUGAAUACACAAAC----ACA------CAUUUCAUUUU
((((((..((((.((((((............)))))).((((...((((.(((..(....)..)))))))..))))..)))).))))))......----...------........... ( -23.60)
>DroEre_CAF1 39800 116 - 1
GUAUUCU-UGAGCUAUUGUGUUUCUACCUCAACAAUAAGGUCUUCGAUAUGAUGUCAUAU-GUAUUUGUCUUGGCCAACUUACGAAUACACACGCGUGCACACUUCUACAUUUCUUUU-
((((((.-((((.((((((............)))))).((((...((((.((((.(....-)))))))))..))))..)))).)))))).............................- ( -19.40)
>DroYak_CAF1 40813 117 - 1
GUAUUCU-UAAGCUAUUGUGUUUCUACCUCAACAAUAAGGCCUUCGAUAUGAUGUCAUAU-GUAUUUGUCUUGGCCAACUUACGAAUACACAGACGUGCACACUUCUACAUUUCUUUUU
((((((.-((((.((((((............)))))).((((...((((.((((.(....-)))))))))..))))..)))).))))))..(((.((....)).)))............ ( -23.70)
>consensus
GUAUUCU_UAAGCUAUUGUGCUUCUACCUCAACAAUAAGGCCUUCGAUAUGAUGUCAUAU_GUAUUUGUCUUGGCCAACUUAUGAAUACACAGAC____ACACU_CUACAUUUCAUUUU
((((((...(((.((((((............)))))).((((...((((.((((........))))))))..))))..)))..)))))).............................. (-18.98 = -18.66 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:35 2006