Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,803,203 – 4,803,323 |
Length | 120 |
Max. P | 0.999771 |
Location | 4,803,203 – 4,803,323 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.65 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -25.78 |
Energy contribution | -25.95 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -2.15 |
Structure conservation index | 0.98 |
SVM decision value | 4.04 |
SVM RNA-class probability | 0.999771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4803203 120 + 27905053 GGCUUUAACGACACUGGUGACCCAGAUUUUAGGGGCAAGCUUAAGCUCAAAAGCUACAACGCUAAUAAGAACAGCAAUGCCGCCGCCAUUACCCACACACAAACACACAUAAAAAUACAA (((..........((((....))))......(((((((((((........))))).....(((.........)))..)))).)))))................................. ( -24.60) >DroSec_CAF1 38447 120 + 1 GGCUUUAACGACACUGGUGACCCAGAUUUUAGGGGCAAGCUUAAGCUUAAAAGCUACAACGCUAAUAAGAACAGCAAUGCCGCCGCCAUUACCCACACAUAAACACACAUAAAAAUACAA (((..........((((....))))......((((((.(((....((((..(((......)))..))))...)))..)))).)))))................................. ( -26.30) >DroSim_CAF1 34646 120 + 1 GGCUUUAACGACACUGGUGACCCAGAUUUUAGGGGCAAGCUUAAGCUUAAAAGCUACAACGCUAAUAAGAACAGCAAUGCCGCCGCCAUUGCCCACACACAAACACACAUAAAAAUACAA (((..........((((....))))......((((((.(((....((((..(((......)))..))))...)))..)))).)))))................................. ( -26.30) >DroEre_CAF1 39424 112 + 1 GGCUUUAACGACACUGGUGACCCAGAUUUUAGGGGCAAGCUUAAGCUUAAAAGCUACAACGCUAAUAAGAACAGCAAUGCCGCCGCCAUUACCCACA--CAAGCACACAUAAAA------ (((..........((((....))))......((((((.(((....((((..(((......)))..))))...)))..)))).)))))..........--...............------ ( -26.30) >DroYak_CAF1 40414 118 + 1 GGCUUUAACGACACUGGUGACCCAGAUUUUAGGGGCAAGCUUAAGCUUAAAAGCUACAACGCUAAUAAGAACAGCAAUGCCGCCGCCAUUACCCACA--CAAGCACACAUAAAAAUACAA (((..........((((....))))......((((((.(((....((((..(((......)))..))))...)))..)))).)))))..........--..................... ( -26.30) >DroAna_CAF1 38426 118 + 1 GGCUUUAACGACACUGGUGACCCAGAUUUUCGGGGCAAGCUUAAGCUUAAAAGCUACAACGCUAAUAAGAACAGCAAUGCCGCCGCCAUUACCCAUA--CAAACACACACUGGCACACAC (((.....(((..((((....))))....))).((((.(((....((((..(((......)))..))))...)))..)))))))((((.........--...........))))...... ( -28.45) >consensus GGCUUUAACGACACUGGUGACCCAGAUUUUAGGGGCAAGCUUAAGCUUAAAAGCUACAACGCUAAUAAGAACAGCAAUGCCGCCGCCAUUACCCACA__CAAACACACAUAAAAAUACAA (((..........((((....))))......((((((.(((....((((..(((......)))..))))...)))..)))).)))))................................. (-25.78 = -25.95 + 0.17)
Location | 4,803,203 – 4,803,323 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.65 |
Mean single sequence MFE | -33.72 |
Consensus MFE | -32.98 |
Energy contribution | -32.70 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -1.10 |
Structure conservation index | 0.98 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4803203 120 - 27905053 UUGUAUUUUUAUGUGUGUUUGUGUGUGGGUAAUGGCGGCGGCAUUGCUGUUCUUAUUAGCGUUGUAGCUUUUGAGCUUAAGCUUGCCCCUAAAAUCUGGGUCACCAGUGUCGUUAAAGCC ........................((...(((((((((.((((..(((...((((..(((......)))..))))....))).))))))......((((....)))).)))))))..)). ( -33.10) >DroSec_CAF1 38447 120 - 1 UUGUAUUUUUAUGUGUGUUUAUGUGUGGGUAAUGGCGGCGGCAUUGCUGUUCUUAUUAGCGUUGUAGCUUUUAAGCUUAAGCUUGCCCCUAAAAUCUGGGUCACCAGUGUCGUUAAAGCC ...((((..((((((....))))))..)))).(((((((((((..(((...((((..(((......)))..))))....))).))))........((((....)))).)))))))..... ( -33.00) >DroSim_CAF1 34646 120 - 1 UUGUAUUUUUAUGUGUGUUUGUGUGUGGGCAAUGGCGGCGGCAUUGCUGUUCUUAUUAGCGUUGUAGCUUUUAAGCUUAAGCUUGCCCCUAAAAUCUGGGUCACCAGUGUCGUUAAAGCC ...........................(((..(((((((((((..(((...((((..(((......)))..))))....))).))))........((((....)))).)))))))..))) ( -34.10) >DroEre_CAF1 39424 112 - 1 ------UUUUAUGUGUGCUUG--UGUGGGUAAUGGCGGCGGCAUUGCUGUUCUUAUUAGCGUUGUAGCUUUUAAGCUUAAGCUUGCCCCUAAAAUCUGGGUCACCAGUGUCGUUAAAGCC ------...............--.((...(((((((((.((((..(((...((((..(((......)))..))))....))).))))))......((((....)))).)))))))..)). ( -33.00) >DroYak_CAF1 40414 118 - 1 UUGUAUUUUUAUGUGUGCUUG--UGUGGGUAAUGGCGGCGGCAUUGCUGUUCUUAUUAGCGUUGUAGCUUUUAAGCUUAAGCUUGCCCCUAAAAUCUGGGUCACCAGUGUCGUUAAAGCC ..((((........))))...--.((...(((((((((.((((..(((...((((..(((......)))..))))....))).))))))......((((....)))).)))))))..)). ( -34.30) >DroAna_CAF1 38426 118 - 1 GUGUGUGCCAGUGUGUGUUUG--UAUGGGUAAUGGCGGCGGCAUUGCUGUUCUUAUUAGCGUUGUAGCUUUUAAGCUUAAGCUUGCCCCGAAAAUCUGGGUCACCAGUGUCGUUAAAGCC .....((((.(((........--))).))))..(((((.((((..(((...((((..(((......)))..))))....))).))))))((....((((....))))..))......))) ( -34.80) >consensus UUGUAUUUUUAUGUGUGUUUG__UGUGGGUAAUGGCGGCGGCAUUGCUGUUCUUAUUAGCGUUGUAGCUUUUAAGCUUAAGCUUGCCCCUAAAAUCUGGGUCACCAGUGUCGUUAAAGCC ...........................(((..(((((((((((..(((...((((..(((......)))..))))....))).))))........((((....)))).)))))))..))) (-32.98 = -32.70 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:33 2006