Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,800,091 – 4,800,192 |
Length | 101 |
Max. P | 0.912571 |
Location | 4,800,091 – 4,800,192 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 97.03 |
Mean single sequence MFE | -23.56 |
Consensus MFE | -22.30 |
Energy contribution | -23.34 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.40 |
Structure conservation index | 0.95 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912571 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4800091 101 - 27905053 UCGAGGAAUAUAGCCAGAGGUUUGUCAUGCUUAUUAAACUUUUGGUUCUGUUCCAAAAACUAUUUUGGGCGGCCGCACUUUAUGAUUGGUAAUUAAAAAUA ....((((((.(((((((((((((..........))))))))))))).))))))........((((((...((((..(.....)..))))..))))))... ( -26.40) >DroSec_CAF1 35511 101 - 1 UCGAGGAAUAUAGCCAGAGGUUUGUCAUGCUUAUUAAACUUUUGGUUCUGUUCCAAAAACUAUUUUGGGCGGCCGCACUUUAUGAUUGGUAAUUAAAAAUA ....((((((.(((((((((((((..........))))))))))))).))))))........((((((...((((..(.....)..))))..))))))... ( -26.40) >DroSim_CAF1 31613 101 - 1 UCGAGGAAUAUAGCCAGAGGUUUGUCAUGCUUAUUAAACUUUUGGUUCUGUUCCAAAAACUAUUUUGGGCGGCCGCACUUUAUGAUUGGUAAUUAAAAAUA ....((((((.(((((((((((((..........))))))))))))).))))))........((((((...((((..(.....)..))))..))))))... ( -26.40) >DroEre_CAF1 36333 101 - 1 UCGAGGAAUAUAGACUCAGGCUUGUCAUGCUUAUUAAACUUUUGGUUCUGUUCCAAAAAAUAUUUUGGGCGGCCGCACUUUAUGAUUGGUAAUUAAAAAUA ..(((.........))).((((.(((.....((((....((((((.......)))))))))).....)))))))........................... ( -15.80) >DroYak_CAF1 36623 101 - 1 UCGAGGAAUAUAGCCUCAGGUUUGUCAUGCUUAUUAAACUUUUGGUUCUGUUCCAAAAAAUAUUUUGGGCGGCCGCACUUUAUGAUUGGCAAUUAAAAAUA ....((((((.((((..(((((((..........)))))))..)))).))))))........((((((...((((..(.....)..))))..))))))... ( -22.80) >consensus UCGAGGAAUAUAGCCAGAGGUUUGUCAUGCUUAUUAAACUUUUGGUUCUGUUCCAAAAACUAUUUUGGGCGGCCGCACUUUAUGAUUGGUAAUUAAAAAUA ....((((((.(((((((((((((..........))))))))))))).))))))........((((((...((((..(.....)..))))..))))))... (-22.30 = -23.34 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:31 2006