Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,797,164 – 4,797,267 |
Length | 103 |
Max. P | 0.781058 |
Location | 4,797,164 – 4,797,267 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.63 |
Mean single sequence MFE | -31.58 |
Consensus MFE | -24.06 |
Energy contribution | -24.45 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.15 |
Mean z-score | -2.00 |
Structure conservation index | 0.76 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4797164 103 - 27905053 -------------UUGCUUUUUCAUGUGGCGAUGGGAAAUUUCCUUGGGGUACGAGGAGUUUCCCAAUUGGGGUUUUAUC----UUAAAGUGAAAGCAAAGGAAGACAUUAGGCAGCGGA -------------(((((.(((.((((..((((((((((((.(((((.....))))))))))))).)))).(.((((((.----.....)))))).)........)))).))).))))). ( -29.70) >DroSec_CAF1 32590 103 - 1 -------------UCGCUUUUUCAUGUGGCGAUGGGAAAUUUCCUUGGGGCACGAGGAGUUUCCCAAUUGGGGGUUUUUC----UUAAAGUGAAAGCAAAGGAAGACAUUGGGCAGCGGA -------------(((((..((((.....((((((((((((.(((((.....))))))))))))).))))...(((((((----((...((....)).)))))))))..)))).))))). ( -34.50) >DroSim_CAF1 28655 103 - 1 -------------UCGCUUUUUCAUGUGGCGAUGGGAAAUUUCCUUGGGGCACGAGGAGUUUCCCAAUUGGGGGUUUUUC----UUAAAGUGAAAGCAAAGGAAGACAUUGGGCAGCGGA -------------(((((..((((.....((((((((((((.(((((.....))))))))))))).))))...(((((((----((...((....)).)))))))))..)))).))))). ( -34.50) >DroEre_CAF1 33269 104 - 1 -----------UUUUGCUUUUUCAUGUGGCGAUGGGAAAUUUCCUUGGGGCACGAGGAGUUUCCCAGUUGGG-GUUUUUC----GUAAAGUGAAAGCAAAGGAAGACAUUGGGCAGCGGA -----------.((((((..............(((((((((.(((((.....))))))))))))))(((.((-(((((((----.....((....))...))))))).)).))))))))) ( -32.10) >DroYak_CAF1 33670 104 - 1 -----------UUUUGCUUUUUCAUGUGGCGAUGGGAAAUUUCCUUGGGGCACGAGGAGUUUCCCAGUUGGG-GUUUUUC----GUAAAGUGAAAGCAAAGGAAGACAUUGGGCAGCGGA -----------.((((((..............(((((((((.(((((.....))))))))))))))(((.((-(((((((----.....((....))...))))))).)).))))))))) ( -32.10) >DroAna_CAF1 32218 116 - 1 GUAUUUAUUUCUUUUUCUUUUUUGGGUGAGAUGGGGAAAUUUUCUUA--GCUCGAGGAGUUUCCCAGUGGGA-UUUUUUUACAUGUUAAGUGAAAGCACAGGAUGUGAUUUGU-UGGGGA ......(((((((..((((........))))..))))))).((((((--((...(((((..((((...))))-..))))).((((((..(((....)))..))))))....))-)))))) ( -26.60) >consensus _____________UUGCUUUUUCAUGUGGCGAUGGGAAAUUUCCUUGGGGCACGAGGAGUUUCCCAAUUGGG_GUUUUUC____GUAAAGUGAAAGCAAAGGAAGACAUUGGGCAGCGGA .............(((((.((..((((.....(((((((((.(((((.....)))))))))))))).......................((....))........))))..)).))))). (-24.06 = -24.45 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:28 2006