Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,796,165 – 4,796,281 |
Length | 116 |
Max. P | 0.692725 |
Location | 4,796,165 – 4,796,281 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 82.46 |
Mean single sequence MFE | -23.24 |
Consensus MFE | -16.40 |
Energy contribution | -16.80 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.10 |
Mean z-score | -1.76 |
Structure conservation index | 0.71 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692725 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4796165 116 - 27905053 UAAAAUUACUGCCUCAAGCCGUGGAUCCCAUAA-AAACGGUGGUAAAGGAAGUACAUUUACAUAUCUUUGCUAAUGGGUAAUAAAUAAUAUAUAUGUAUAACCCAUAUGGGUUCAUA ......(((.((.....)).)))((.((((((.-......(((((((((..(((....)))...))))))))).(((((.(((.(((.....))).))).))))))))))).))... ( -27.30) >DroSec_CAF1 31531 113 - 1 UAAAAUUACUGCCCCAAGCCGUGGACCCUAUAAAAAACGGUGGUAAAGGAAGUACAUUUACAUAUCUUUGCUAAUGGGUAAUACAUAAUAUAUA----UAACCCAUAUGGGUUCAUA ....................((((((((............(((((((((..(((....)))...)))))))))((((((.(((.........))----).))))))..)))))))). ( -26.70) >DroSim_CAF1 27588 111 - 1 UAAAAUUACUGCCCCAAGCCGUGGAUCCUAUAAAAAACGGUGGUAAAGGAAGUACAUUUACAUAUCUUUGCUAAUGGGUAAUACAUAAUAUAUA----UAAACCA--UGGGUUCAUA .........(((((...(((((..............)))))((((((((..(((....)))...))))))))...)))))............((----(.((((.--..)))).))) ( -19.84) >DroEre_CAF1 32298 100 - 1 UAAAAUUAUUGCCCCAUGCCGUGGAUCCUAUAA-AAACGGUGGUAAAGGAAUUACAUUUACAUAUCUUUGCAGAUGGGCAAUAACAAGU--UUG----U----------UUUUCGUA .....(((((((((...(((((...........-..))))).(((((((.((.........)).)))))))....))))))))).....--...----.----------........ ( -21.92) >DroYak_CAF1 32717 102 - 1 UAAAAUUAUUGCCCCAAGCCGUGGAUCCUAUAA-AAACGGUGGUUAAGGAAUUACAUUUACAUAUCUUUGCUAAUGGGCAAUAACAAAUGUUUU----U----------CCUUUAUA ..........(((....(((((...........-..)))))))).((((((..((((((........(((((....)))))....))))))..)----)----------)))).... ( -20.42) >consensus UAAAAUUACUGCCCCAAGCCGUGGAUCCUAUAA_AAACGGUGGUAAAGGAAGUACAUUUACAUAUCUUUGCUAAUGGGUAAUAAAUAAUAUAUA____UAA_CCA__UGGGUUCAUA .........(((((...(((((..............)))))((((((((..(((....)))...))))))))...)))))..................................... (-16.40 = -16.80 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:23 2006