Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,795,744 – 4,795,845 |
Length | 101 |
Max. P | 0.639949 |
Location | 4,795,744 – 4,795,845 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 91.10 |
Mean single sequence MFE | -24.64 |
Consensus MFE | -18.05 |
Energy contribution | -18.33 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -1.91 |
Structure conservation index | 0.73 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4795744 101 + 27905053 AUAU-----AUAC-CGGUAUACCGCCGCAGCACAGUGGAACCAAAUUGGCAGUACAUCCUGCUUCCUUAAACUGCCGAUUAUUAUUUAUGUGCGUAGUUAUUUAUUU ....-----.(((-((((.....))))..(((((.((((....((((((((((.................))))))))))....))))))))))))........... ( -23.53) >DroSec_CAF1 31111 102 + 1 AUAU-----AUACGCGGUAUACCGCCGCAGCACAGUGGAACCAAAUUGGCAGUACAUCCUGCUUCCUUAAACUGCCGAUUAUUAUUUAGGUGCGUAUUUAUUUAUUU (((.-----(((((((((.....))))).((((..((((....((((((((((.................))))))))))....)))).)))))))).)))...... ( -29.13) >DroSim_CAF1 27168 101 + 1 AUAU-----AUAC-CGGUAUACCGCCGCAGCACAGUGGAACCAAAUUGGCAGUGCAUCCUGCUUCCUUAAAAUGCCGAUUAUUAUUUAGGUGCGUAUUUAUUUAUUU (((.-----.(((-((((......((((......)))).))).((((((((..((.....))..........))))))))........))))..))).......... ( -21.20) >DroEre_CAF1 31791 101 + 1 GUAC-----AUAC-CGGUAUACCGCCGCAGCACAGUGGAACCAAAUUGGCAGUACAUCCUGCUUCCUUAAACUGCCGAUUAUUAUUUAGUUGCGUUUUUAUUUCAUU ....-----....-(((....))).((((((....((....))((((((((((.................))))))))))........))))))............. ( -23.53) >DroYak_CAF1 32211 106 + 1 AUAUACUUUAUAC-CGGUAUGCCGCUGCAGCACAGUGGAACCAAAUUGGCAGUACAUCCUGCUUCCUUAAACUGCCGAUUACUAAUUAGUUGUGAAUUUAUUUCUUU ......((((((.-((((...((((((.....)))))).))).((((((((((.................))))))))))........).))))))........... ( -25.83) >consensus AUAU_____AUAC_CGGUAUACCGCCGCAGCACAGUGGAACCAAAUUGGCAGUACAUCCUGCUUCCUUAAACUGCCGAUUAUUAUUUAGGUGCGUAUUUAUUUAUUU ..............((((.....))))..((((..((....))((((((((((.................)))))))))).........)))).............. (-18.05 = -18.33 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:22 2006