Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,795,238 – 4,795,331 |
Length | 93 |
Max. P | 0.573248 |
Location | 4,795,238 – 4,795,331 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.34 |
Mean single sequence MFE | -31.04 |
Consensus MFE | -25.17 |
Energy contribution | -25.61 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.10 |
Mean z-score | -1.80 |
Structure conservation index | 0.81 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4795238 93 + 27905053 CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAG---------------------------CGGCGGCGUUCCAACUUUUUAUGUGGCUCCCAAGGAGGAGCUGGAG .............((((((((((((((((((((..(((.(((((...---------------------------.))))).)))........)))))))))))(....).))))))))). ( -31.30) >DroSec_CAF1 30601 93 + 1 CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAG---------------------------CGGCGGCGUUCCAACUUUUUAUGUGGCUCCCAAGGAGGAGCUGGAG .............((((((((((((((((((((..(((.(((((...---------------------------.))))).)))........)))))))))))(....).))))))))). ( -31.30) >DroSim_CAF1 26650 93 + 1 CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAG---------------------------CGGCGGCGUUCCAACUUUUUAUGUGGCUCCCAAGGAGGAGCUGGAG .............((((((((((((((((((((..(((.(((((...---------------------------.))))).)))........)))))))))))(....).))))))))). ( -31.30) >DroEre_CAF1 31288 93 + 1 CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAG---------------------------CGGCGGCGUUCCACCUUUUUAUGUGGCUCCCAAGGAGGAGCUGGAG .............((((((((((((((((((((..(((.(((((...---------------------------.))))).)))........)))))))))))(....).))))))))). ( -31.30) >DroYak_CAF1 31710 93 + 1 CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAG---------------------------CGGCGGCGUUCCAACUUUUUAUGUGGCUCCCAAGGAGGAGCUGGAG .............((((((((((((((((((((..(((.(((((...---------------------------.))))).)))........)))))))))))(....).))))))))). ( -31.30) >DroAna_CAF1 30437 117 + 1 CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAGCAACGGCGACUUCGGCAGCGGCAUCGGCGGCGGCGUCCCAUCUUUUUAUGUGGAGUUUCAGAAGGAGUCG--- .................(((...(((...............))).)))..((((..((((.((.((.((....)).)).)).((((((......))).)))......))))..))))--- ( -29.76) >consensus CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAG___________________________CGGCGGCGUUCCAACUUUUUAUGUGGCUCCCAAGGAGGAGCUGGAG .............((((((((((((((((((((..(((.(((((...............................))))).)))........)))))))))))(....).))))))))). (-25.17 = -25.61 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:21 2006