Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,794,214 – 4,794,313 |
Length | 99 |
Max. P | 0.978649 |
Location | 4,794,214 – 4,794,313 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 89.54 |
Mean single sequence MFE | -23.92 |
Consensus MFE | -18.26 |
Energy contribution | -19.58 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.16 |
Mean z-score | -2.74 |
Structure conservation index | 0.76 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978649 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4794214 99 + 27905053 CUAAAGAUUUUAGCUAGCUUUC-CACACAGAAAGGUAAAUGCAUAAAGUGCACAGAUGUAGCCUUUCUUUCAUCAGUCUUAAAGGCCCAUCUGAAUCUUU ..(((((((.....((.(((((-......))))).))..(((((...)))))((((((..((((((....(....)....)))))).))))))))))))) ( -23.80) >DroSec_CAF1 29604 99 + 1 CCAAGGAUUUUAGCUAGCUUUC-CACACAGAAAGUUAAAUGCAUAAAGUGCACAGAUGUUGCCUUUCUUUCAUCAGUCUUAAAGGCGCAUCUGAAUCUUU ..(((((((.....((((((((-......))))))))..(((((...)))))(((((((.((((((....(....)....)))))))))))))))))))) ( -28.30) >DroSim_CAF1 25636 97 + 1 CCGAAGAUUUUAGCUAACUUU--CACACAGAAAGUUAAAUGCAAAAAGUGCACAGA-GUAGCCUUUCUUUCAUCAGUCUUAAAGGCGCAUCUGAAUCUUU ..(((((((.....(((((((--(.....))))))))..((((.....))))((((-...((((((....(....)....))))))...))))))))))) ( -25.00) >DroEre_CAF1 30175 99 + 1 GUACA-AUAAUUGCAAGCUUUCCCACACAGAAAGCUAAAUGCAUAAAGUGCACAGAUGUAGCCUUUCUUUCAUCAGUCUUAAAAGCGCAUCUGAAUCUUU ((((.-.....(((((((((((.......)))))))...))))....)))).(((((((.((.(((....(....)....))).)))))))))....... ( -23.40) >DroYak_CAF1 30569 99 + 1 CUAGAGAUAUUUGCUAGCUUUC-CACCCAGAAAGUUAAAUGCAUAAAGUGCACAGAUGUAGCCUUUCUUUCAUCAGUCGCAAAAGCCCAUCUGAAUCUUU ...(..(((((((.((((((((-......))))))))..(((((...))))))))))))..)..........((((..((....))....))))...... ( -19.10) >consensus CUAAAGAUUUUAGCUAGCUUUC_CACACAGAAAGUUAAAUGCAUAAAGUGCACAGAUGUAGCCUUUCUUUCAUCAGUCUUAAAGGCGCAUCUGAAUCUUU ..((((((......((((((((.......))))))))..((((.....))))(((((((.((((((....(....)....))))))))))))).)))))) (-18.26 = -19.58 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:18 2006