| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,791,414 – 4,791,547 |
| Length | 133 |
| Max. P | 0.999669 |
| Location | 4,791,414 – 4,791,522 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.82 |
| Mean single sequence MFE | -26.26 |
| Consensus MFE | -23.20 |
| Energy contribution | -23.32 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4791414 108 + 27905053 GU------------UCAGUUCGUUUGACCGCAAAAGAUCUGUAAAUUGAGGUGCAAAUAACAAAUUGCGCAGAAGUCAAAGCAAUCUGCAACGCCUGCGAGCUGCACCUUUCUAUUUACC ..------------..((.((.((((....)))).)).))((((((.((((((((.............(((((.((....))..)))))..((....))...))))))))...)))))). ( -26.00) >DroSec_CAF1 26715 108 + 1 GU------------UCAGUUGGCUUGACCGCAAAAGAUCUGUAAAUUGAGGUGCAAAUAACAAAUUGCGCAGAAGUCAAAGCAAUUUGCAACGCCUGCGAGCUGCACCUUUCUAUUUACC ((------------(.((....)).)))............((((((.((((((((.....((((((((...(....)...))))))))...((....))...))))))))...)))))). ( -26.80) >DroSim_CAF1 22197 108 + 1 GU------------UCAGUUCGCUUGACCGCAAAAGAUCUGUAAAUUGAGGUGCAAAUAACAAAAUGCGCAGAAGUCAACGCAAUUUGCAACGCCUGCGAGCUGCACCUUUCUAUUUACC ..------------..((.((..(((....)))..)).))((((((.((((((((..........((((..(....)..)))).((((((.....)))))).))))))))...)))))). ( -26.50) >DroEre_CAF1 27032 108 + 1 GU------------UCAGUUCGCUUGACCGCAAAAUAUCUGUAAAUUAAGGUGCAAAUAACAAAUUGCGCAGAAGUCAAAGCAAUUUGCAACGCCUGCGAGCUGCACCUUUCUAUUUACC ..------------.......((......)).........((((((.((((((((.....((((((((...(....)...))))))))...((....))...))))))))...)))))). ( -26.50) >DroYak_CAF1 27437 108 + 1 GU------------UCAGUUCGCUUGACCGCAAAAUAUCUGUAAAUUAAGGUGCAAAUAACAAAUUGCGCAGAAGUCAAAGCAAUUUGCAACGCCUGCGAACUGCACCUUUCUAUUUACC ..------------.......((......)).........((((((.((((((((.....((((((((...(....)...))))))))...((....))...))))))))...)))))). ( -26.50) >DroAna_CAF1 25883 120 + 1 GGCUUGCCCCGACUGCCCUCCUCCUGACCGCAAAAUAUCUGUAAAUUAAGGUGCAAAUAGCAAAUUGCGCAGAAGUCAAAACAAUUUGCAACGCCUCCGAACUGCACCUUUCCAUUUGCC (((...........))).......................((((((.((((((((....((((((((..............))))))))..((....))...))))))))...)))))). ( -25.24) >consensus GU____________UCAGUUCGCUUGACCGCAAAAGAUCUGUAAAUUAAGGUGCAAAUAACAAAUUGCGCAGAAGUCAAAGCAAUUUGCAACGCCUGCGAGCUGCACCUUUCUAUUUACC ........................................((((((.((((((((.....((((((((...(....)...))))))))...((....))...))))))))...)))))). (-23.20 = -23.32 + 0.11)
| Location | 4,791,442 – 4,791,547 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 97.90 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -24.28 |
| Energy contribution | -24.44 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.98 |
| SVM decision value | 3.86 |
| SVM RNA-class probability | 0.999669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4791442 105 + 27905053 GUAAAUUGAGGUGCAAAUAACAAAUUGCGCAGAAGUCAAAGCAAUCUGCAACGCCUGCGAGCUGCACCUUUCUAUUUACCCAAAAUAAGACCGAAAACGAACUGC ((((((.((((((((.............(((((.((....))..)))))..((....))...))))))))...)))))).......................... ( -23.50) >DroSec_CAF1 26743 105 + 1 GUAAAUUGAGGUGCAAAUAACAAAUUGCGCAGAAGUCAAAGCAAUUUGCAACGCCUGCGAGCUGCACCUUUCUAUUUACCCAAAAUAAGACCGAAAACGAACUGC ((((((.((((((((.....((((((((...(....)...))))))))...((....))...))))))))...)))))).......................... ( -25.50) >DroSim_CAF1 22225 105 + 1 GUAAAUUGAGGUGCAAAUAACAAAAUGCGCAGAAGUCAACGCAAUUUGCAACGCCUGCGAGCUGCACCUUUCUAUUUACCCAAAAUAAGACCGAAAACGAACUGC ((((((.((((((((..........((((..(....)..)))).((((((.....)))))).))))))))...)))))).......................... ( -24.70) >DroEre_CAF1 27060 105 + 1 GUAAAUUAAGGUGCAAAUAACAAAUUGCGCAGAAGUCAAAGCAAUUUGCAACGCCUGCGAGCUGCACCUUUCUAUUUACCCAAAAUAAGACCGAAAACGAACUGC ((((((.((((((((.....((((((((...(....)...))))))))...((....))...))))))))...)))))).......................... ( -25.10) >DroYak_CAF1 27465 105 + 1 GUAAAUUAAGGUGCAAAUAACAAAUUGCGCAGAAGUCAAAGCAAUUUGCAACGCCUGCGAACUGCACCUUUCUAUUUACCCAAAAUAAGACCGAAAACGAACUGC ((((((.((((((((.....((((((((...(....)...))))))))...((....))...))))))))...)))))).......................... ( -25.10) >consensus GUAAAUUGAGGUGCAAAUAACAAAUUGCGCAGAAGUCAAAGCAAUUUGCAACGCCUGCGAGCUGCACCUUUCUAUUUACCCAAAAUAAGACCGAAAACGAACUGC ((((((.((((((((.....((((((((............))))))))...((....))...))))))))...)))))).......................... (-24.28 = -24.44 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:13 2006