Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 823,523 – 823,643 |
Length | 120 |
Max. P | 0.998666 |
Location | 823,523 – 823,643 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.49 |
Mean single sequence MFE | -25.48 |
Consensus MFE | -23.10 |
Energy contribution | -23.54 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -2.13 |
Structure conservation index | 0.91 |
SVM decision value | 3.18 |
SVM RNA-class probability | 0.998666 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 823523 120 + 27905053 UUUUUUCCCAUUUGGGGUUAUUGUUUUUUCCAGCUACGAAUCUUUUUCGGUACGUCAUCGUUUCCUUGUUUCGUUCUGAUAUCUCGCUGGAAAAAACCUCGGGCUUAAAUUUAUAUUUGG ......(((....)))(((...((((((((((((...(((.....)))((.(((....)))..))....................))))))))))))....)))................ ( -27.10) >DroSec_CAF1 5885 120 + 1 UUUUUUCCCAUUUGGGGUUAUUGUUUUUUCCAGCUACGAGUCUUUUUCGGUACGUCAUCGUUUCCUUGUUUCGCUUUGAUAUCUCGCUGGAAAAAACCUCUGGCUUAAAUUUAUAUUUUG ......(((....)))((((..((((((((((((..((((.....))))....((((..((...........))..)))).....))))))))))))...))))................ ( -27.40) >DroSim_CAF1 3062 120 + 1 UUUUUUCCCAUUUGGGGUUAUUGUUUUUUCCAGCUACGAAUCUUUUUCGGUACGUCAUCGUUUCCUUGUUUCGCUUUGAUAUCUCGCUGGAAAAAACCUCGGGCUUAAAUUUAUAUUUUG ......(((....)))(((...((((((((((((..((((.....))))....((((..((...........))..)))).....))))))))))))....)))................ ( -27.40) >DroEre_CAF1 6492 118 + 1 UUUUUUCCCAUUUCAGGUUAUUGUU--UUCCAGCCACGAGUCUUUUUCGGUACGUCAUCGUUUCCUUGUUUCGUUUUGAUAUCUCGCUGGAAAAAACCUCGGGCUUAAAUUUAUAUUUUG ......(((.....(((((....((--(((((((...(((......((((.(((....((......))...))).))))...))))))))))))))))).)))................. ( -23.40) >DroYak_CAF1 6180 117 + 1 UUUUUUU-CAUUUGGGGUAAUGGUUU-UUUCAGCUACGAGUCGUUUUCGGUACGUCAUCGUUUCCUUGUUUCGUUUUGAUAUCUCGCUGGAAAAAACCUCGGGCUUAUAUUUAUAUUUU- .......-..((((((((.....(((-(((((((..((((.....))))....((((.((...........))...)))).....))))))))))))))))))................- ( -22.10) >consensus UUUUUUCCCAUUUGGGGUUAUUGUUUUUUCCAGCUACGAGUCUUUUUCGGUACGUCAUCGUUUCCUUGUUUCGUUUUGAUAUCUCGCUGGAAAAAACCUCGGGCUUAAAUUUAUAUUUUG .........(((((((.(....((((((((((((..((((.....))))....((((.((...........))...)))).....))))))))))))....).))))))).......... (-23.10 = -23.54 + 0.44)
Location | 823,523 – 823,643 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.49 |
Mean single sequence MFE | -25.76 |
Consensus MFE | -20.70 |
Energy contribution | -21.50 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.08 |
Mean z-score | -3.34 |
Structure conservation index | 0.80 |
SVM decision value | 2.79 |
SVM RNA-class probability | 0.997034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 823523 120 - 27905053 CCAAAUAUAAAUUUAAGCCCGAGGUUUUUUCCAGCGAGAUAUCAGAACGAAACAAGGAAACGAUGACGUACCGAAAAAGAUUCGUAGCUGGAAAAAACAAUAACCCCAAAUGGGAAAAAA .......................((((((((((((((....))...(((((.(..(....).....((...)).....).))))).))))))))))))......(((....)))...... ( -27.70) >DroSec_CAF1 5885 120 - 1 CAAAAUAUAAAUUUAAGCCAGAGGUUUUUUCCAGCGAGAUAUCAAAGCGAAACAAGGAAACGAUGACGUACCGAAAAAGACUCGUAGCUGGAAAAAACAAUAACCCCAAAUGGGAAAAAA .......................((((((((((((((....))...((((.....(....).....((...))........)))).))))))))))))......(((....)))...... ( -26.70) >DroSim_CAF1 3062 120 - 1 CAAAAUAUAAAUUUAAGCCCGAGGUUUUUUCCAGCGAGAUAUCAAAGCGAAACAAGGAAACGAUGACGUACCGAAAAAGAUUCGUAGCUGGAAAAAACAAUAACCCCAAAUGGGAAAAAA .......................((((((((((((((....))...(((((.(..(....).....((...)).....).))))).))))))))))))......(((....)))...... ( -28.00) >DroEre_CAF1 6492 118 - 1 CAAAAUAUAAAUUUAAGCCCGAGGUUUUUUCCAGCGAGAUAUCAAAACGAAACAAGGAAACGAUGACGUACCGAAAAAGACUCGUGGCUGGAA--AACAAUAACCUGAAAUGGGAAAAAA .................((((((((((((((((((...........(((......(....).....))).((((.......))).))))))))--))....)))))....))))...... ( -25.30) >DroYak_CAF1 6180 117 - 1 -AAAAUAUAAAUAUAAGCCCGAGGUUUUUUCCAGCGAGAUAUCAAAACGAAACAAGGAAACGAUGACGUACCGAAAACGACUCGUAGCUGAAA-AAACCAUUACCCCAAAUG-AAAAAAA -.....................(((((((((.(((((....))...((((.....(....).....(((.......)))..)))).)))))))-))))).............-....... ( -21.10) >consensus CAAAAUAUAAAUUUAAGCCCGAGGUUUUUUCCAGCGAGAUAUCAAAACGAAACAAGGAAACGAUGACGUACCGAAAAAGACUCGUAGCUGGAAAAAACAAUAACCCCAAAUGGGAAAAAA .......................((((((((((((((....))...((((.....(....).....((...))........)))).)))))))))))).....(((.....)))...... (-20.70 = -21.50 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:32 2006