| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,789,292 – 4,789,398 |
| Length | 106 |
| Max. P | 0.643386 |
| Location | 4,789,292 – 4,789,398 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.96 |
| Mean single sequence MFE | -28.82 |
| Consensus MFE | -19.86 |
| Energy contribution | -19.53 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4789292 106 - 27905053 UUUCUUGGGCAAAAUAUACGUUGGCAACAUGUUGCUGGC------------CC-GGC-AAACUGUAAAUUGCUGGCAACAUGUUUAUAAGGCGGAAUAACAGGAAAAAAUGUUUAAAUUU ((((((((.(((........))).)((((((((((..((------------..-.((-.....)).....))..))))))))))...............))))))).............. ( -28.30) >DroSec_CAF1 24567 102 - 1 ----UUAAGCUAGCUAUACGUUGGCAACAUGUUGCUGGC------------CCCGGC-AAACUGUAAAUUGCUGGCAACAUGUUUACAAGGCGGAAUAACAGGAA-AAAUGUUUAAAUUU ----....((((((.....))))))((((((((((..((------------....((-.....)).....))..)))))))))).............((((....-...))))....... ( -28.20) >DroSim_CAF1 20030 104 - 1 ----UAAAGCAAGCUAUACGUUGGCAACAUGUUGCUGGC------------CCCGGCCAAACUGUAAAUUGCUGGCAACAUGUUUAUAAGGCGAAAUAACAGGAAAAAAUGUUUAAAUUU ----....((..((((.....))))((((((((((..((------------....((......)).....))..))))))))))......)).....((((........))))....... ( -26.70) >DroEre_CAF1 24782 107 - 1 AUAUUAAUGCAAAAUAUACCUUGGCAACAUGUUGCUGGC------------CCCGGC-AAACUGUAAAUUGCUGGCAGCAUGUUUACAAGGCGGAAUAACAGGAAAAAAUGUUUAAAUUU ...........((((((.(((((..((((((((((..((------------....((-.....)).....))..))))))))))..))))).(......)........))))))...... ( -29.70) >DroYak_CAF1 25212 107 - 1 UUUCUUGAGCAAAAUGUACGUUGGCAACAUGUUGCUGGC------------CCCGGC-AAACUGUAAAUUGCUGGCAACAUGUUUACAAGGCGGAAUAACAGGAAAAAAUGUUUAAAUUU (((((((.((.....)).(((((..((((((((((..((------------....((-.....)).....))..))))))))))..))..)))......))))))).............. ( -30.20) >DroAna_CAF1 23899 106 - 1 -------------CCAGUCCGUGGCAACAUGUUGCUGGCGGAACUGCGAAGCCCGGU-AAACUGUAAAUUGCUAGCAACAUGUUUACAAGGCGGAAUAACAGGAAAAAAUGUUUAAAUUC -------------....((((((..((((((((((((((((..((....))..(((.-...)))....))))))))))))))))..)...)))))..((((........))))....... ( -29.80) >consensus ____UUAAGCAAAAUAUACGUUGGCAACAUGUUGCUGGC____________CCCGGC_AAACUGUAAAUUGCUGGCAACAUGUUUACAAGGCGGAAUAACAGGAAAAAAUGUUUAAAUUU ..................(.(((..((((((((((((((...............................))))))))))))))..))).)......((((........))))....... (-19.86 = -19.53 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:09 2006