Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,787,498 – 4,787,615 |
Length | 117 |
Max. P | 0.808175 |
Location | 4,787,498 – 4,787,615 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.16 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -27.88 |
Energy contribution | -27.35 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.14 |
Mean z-score | -0.99 |
Structure conservation index | 0.95 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4787498 117 + 27905053 UAUACGAACAUAUCGGAAACGAUUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAGAAUUGAGAAUAUUCUUCUUAUUUGCGGGGCCGUUGACUUGAGGAAUUUCGAUUUG--- ....((((....(((....)))((((((((((((......((((....(((..(((((..(((((.......))))).)))))..)))))))))))))).)))))...)))).....--- ( -28.50) >DroSec_CAF1 22791 117 + 1 UAUACGAACAUAUCGGAAACGAUUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAGAAUUGAGAAUAUUCUUCUUAUUUGCGGGGCCGUUGACUUGAGGAAUUUCGGUUUG--- ....(((((...(((....)))((((((((((((......((((....(((..(((((..(((((.......))))).)))))..)))))))))))))).))))).......)))))--- ( -29.00) >DroSim_CAF1 18258 117 + 1 UAUACGAACAUAUCGGAAACGAUUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAGAAUUGAGAAUAUUCUUCUUAUUUGCGGGGCCGUUGACUUGAGGAAUUUCGGUUUG--- ....(((((...(((....)))((((((((((((......((((....(((..(((((..(((((.......))))).)))))..)))))))))))))).))))).......)))))--- ( -29.00) >DroEre_CAF1 23013 117 + 1 UAUACGAACAUAUCGGAAACGAUUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAGAAUUGAGAAUAUUCUUCUUAUUUGCGGGGCCGUUGACUUGAGGAAUUUCGGUUUG--- ....(((((...(((....)))((((((((((((......((((....(((..(((((..(((((.......))))).)))))..)))))))))))))).))))).......)))))--- ( -29.00) >DroYak_CAF1 23447 117 + 1 UAUACGAACAUAUCGGAAACGAAUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAGAACUGAGAAUAUUCUUCUUAUUUGCGGGGCCGUUGACUUGAGGAAUUUCGGUUUG--- ..((..((((..(((....)))..((((.(((......))).))))..))))..)).....(((((((((...((((((......(((....)))......))))))))))))))).--- ( -29.90) >DroAna_CAF1 22230 120 + 1 UAUGCGAACAAAUCGGAAACGAAUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAAAAUUGAGAAUAUUCUUCUGAUCCGCGGGGCCGUUGACUUGAGGAAUUUCGGUAUGUGA (((((((((((((((....)......((.(((......))))).)))))))))...............(((.(((((((...((.(((....))).))...)))))))))).)))))... ( -30.40) >consensus UAUACGAACAUAUCGGAAACGAUUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAGAAUUGAGAAUAUUCUUCUUAUUUGCGGGGCCGUUGACUUGAGGAAUUUCGGUUUG___ ..((..((((..(((....)))..((((.(((......))).))))..))))..)).....(((((((((...((((((...((.(((....))).))...))))))))))))))).... (-27.88 = -27.35 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:06 2006