Locus 1656

Sequence ID 3R_DroMel_CAF1
Location 4,787,224 – 4,787,334
Length 110
Max. P 0.773596
window2734

overview

Window 4

Location 4,787,224 – 4,787,334
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 89.31
Mean single sequence MFE -27.24
Consensus MFE -21.22
Energy contribution -22.58
Covariance contribution 1.36
Combinations/Pair 1.09
Mean z-score -1.74
Structure conservation index 0.78
SVM decision value 0.54
SVM RNA-class probability 0.773596
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4787224 110 - 27905053
UGCUAAUUAGAAGUGGGAACGGAUUUUGGCGCUGAGUUCUUUUUUUUUUUUUGAGGUGAAGAAACUAUUGCAGAAAAAUGUUCUCGUUAGCCUAACUAGCUAGCUAAUAU
.((((.........(((((((..((((.(((.((..((((((.((((.....)))).))))))..)).))).))))..)))))))(((((.....)))))))))...... ( -26.20)
>DroSec_CAF1 22497 110 - 1
UGCUAAUUAGAAGUGGGAACGGAUUUUGGCGCUGAGUUCUUUUUUUUUUUUUGAGGUGAAGAAACUAUUGCAGAAAAAUGUUCUCAUUAGUCUAGCUAGCUAGCUAAUAU
.((((.(((((.(((((((((..((((.(((.((..((((((.((((.....)))).))))))..)).))).))))..)))))))))...))))).)))).......... ( -30.40)
>DroSim_CAF1 17964 110 - 1
UGCUAAUUAGAAGUGGGAACGGAUUUUGGCGCUGAGUUCUUUUUUUUUUUUUGAGGUGAAGAAACUAUUGCAGAAAGAUGUUCUCAUUAGUCUAACUAGCUAGCUAAUAU
.((((.(((((.(((((((((..((((.(((.((..((((((.((((.....)))).))))))..)).))).))))..)))))))))...))))).)))).......... ( -31.90)
>DroEre_CAF1 22744 104 - 1
UGCUAAUUAGAAGUGGGAACGGAUUUUGGCGCUGAGUUCUAU------CUUUGAGGUGAAGAAACUAUUGCAGAAUAUUUUUCUCAUUAGUCUAACCAGCUAGCUAAGCU
.(((..(((((.(((((((...((((((.((...((((...(------((((.....)))))))))..))))))))....)))))))...)))))..))).......... ( -22.50)
>DroYak_CAF1 23173 103 - 1
UGCUAAUUAGAAGUGGGAACGGAUUUUGGCGCUGAGUUCGUU------CUUAGAGGUGAAGAAACUAUUGCAGAAGUAUGUUCUCAUUAA-CUAACUCUCUAGCUAAGAU
.((((.((((.((((((((((.(((((.(((...((((..((------(........)))..))))..))).))))).))))))))))..-)))).....))))...... ( -25.20)
>consensus
UGCUAAUUAGAAGUGGGAACGGAUUUUGGCGCUGAGUUCUUUUUUUUUUUUUGAGGUGAAGAAACUAUUGCAGAAAAAUGUUCUCAUUAGUCUAACUAGCUAGCUAAUAU
.((((.(((((((((((((((..((((.(((.((..((((((...............))))))..)).))).))))..))))))))))..))))).)))).......... (-21.22 = -22.58 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:05 2006