Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,783,035 – 4,783,133 |
Length | 98 |
Max. P | 0.921704 |
Location | 4,783,035 – 4,783,133 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -27.22 |
Consensus MFE | -25.77 |
Energy contribution | -25.94 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.30 |
Structure conservation index | 0.95 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921704 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4783035 98 - 27905053 GGCCAAAACGUUUUGACCUUUGCCGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGACCAAUUUCCGUUCGAGUUUU---------------------- ((.......(((((((((((((..((.(((((((((....))))...(((....))))).))).)))))))))))))))......))...........---------------------- ( -26.52) >DroSec_CAF1 18325 98 - 1 GGCCAAAACGUUUUGACCUUUGCCGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGACCAAUUUCCGUUCGAGUUUU---------------------- ((.......(((((((((((((..((.(((((((((....))))...(((....))))).))).)))))))))))))))......))...........---------------------- ( -26.52) >DroSim_CAF1 13771 98 - 1 GGCCAAAACGUUUUGACCUUUGCCGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGACCAAUUUCCGUUCGAGUUUU---------------------- ((.......(((((((((((((..((.(((((((((....))))...(((....))))).))).)))))))))))))))......))...........---------------------- ( -26.52) >DroEre_CAF1 18511 98 - 1 GGCCAAAACGUUUUGACCUUUGACGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGACCAAUUUCCGUUCGAGUUUU---------------------- ((.......(((((((((((((..((.(((((((((....))))...(((....))))).))).)))))))))))))))......))...........---------------------- ( -26.52) >DroYak_CAF1 18775 98 - 1 GGCCAAAACGUUUUGACCUUUGACGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGACCAAUUUCCGUUCGAGUUUU---------------------- ((.......(((((((((((((..((.(((((((((....))))...(((....))))).))).)))))))))))))))......))...........---------------------- ( -26.52) >DroAna_CAF1 18178 120 - 1 GGCCAAAACGUUUUGACCUUUGCCGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGCCCAAUUUCCGUUCGAGUUUUAGGUUUUUCUUCUUCAUUUUUA (((((((((((((.((((..(((....)))..).))).))))..(..(((((((((((...(((......)))......)))))))))))..)))))).))))................. ( -30.70) >consensus GGCCAAAACGUUUUGACCUUUGCCGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGACCAAUUUCCGUUCGAGUUUU______________________ ((.......(((((((((((((..((.(((((((((....))))...(((....))))).))).)))))))))))))))......))................................. (-25.77 = -25.94 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:54 2006