Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,782,895 – 4,783,015 |
Length | 120 |
Max. P | 0.999929 |
Location | 4,782,895 – 4,783,015 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.28 |
Mean single sequence MFE | -39.60 |
Consensus MFE | -36.55 |
Energy contribution | -37.00 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.11 |
Mean z-score | -3.46 |
Structure conservation index | 0.92 |
SVM decision value | 4.62 |
SVM RNA-class probability | 0.999929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4782895 120 - 27905053 AAUUUCCAUCUGAUCAGCAGCUGUUGUUCGGUUCGUGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCUUGGGUCAGACAUUUAGUUGCCUGUUAGAUGGUUAAGUAAGUU .....(((((((((..(((((((.(((..((..((.((.((((((.((((...(((.....))))))))))))).)).))..))..)))..)))))))..)))))))))........... ( -40.60) >DroSec_CAF1 18185 120 - 1 AAUUUCCAUCUGAUCAGCAGCUGUUGUUCGGUUCGUGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCUUGGGUCAGACAUUUAGUUGCCUGUUAGAUGGUUAAGUAAGUU .....(((((((((..(((((((.(((..((..((.((.((((((.((((...(((.....))))))))))))).)).))..))..)))..)))))))..)))))))))........... ( -40.60) >DroSim_CAF1 13631 120 - 1 AAUUUCCAUCUGAUCAGCAGCUGUUGUUCGGUUCGUGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCUUGGGUCAGACAUUUAGUUGCCAGUUAGAUGGUUAAGUAAGUU .....(((((((((..(((((((.(((..((..((.((.((((((.((((...(((.....))))))))))))).)).))..))..)))..)))))))..)))))))))........... ( -40.70) >DroEre_CAF1 18371 120 - 1 AAUUUCCAUCUGAUCAGCAGCUGUUGUUCGGUUCGUGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCUUGGGUCAGACAUUUAGUUGCCUGUUAGAUGGUUAAGUAAGUU .....(((((((((..(((((((.(((..((..((.((.((((((.((((...(((.....))))))))))))).)).))..))..)))..)))))))..)))))))))........... ( -40.60) >DroYak_CAF1 18635 120 - 1 AAUUUCCAUCUGAUCAGCAGCUGUUGUUCGGUUCGUGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCUUGGGUCAGACAUUUAGUUGCCUGUUAGAUCGUUAAGUAAGUU .......(((((((..(((((((.(((..((..((.((.((((((.((((...(((.....))))))))))))).)).))..))..)))..)))))))..)))))))............. ( -34.40) >DroAna_CAF1 18023 115 - 1 AAUUUUCG-----UCAGCAGCUGUUGUUCGGGCCGGGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCCCGGGUCAGACACUUAGUUGCCUGUUAGAUGGUUAAAUAAGAU (((..((.-----.(((((((((.(((..((.((((((.((((((.((((...(((.....))))))))))))).)))))).))..)))..)))))).)))...))..)))......... ( -40.70) >consensus AAUUUCCAUCUGAUCAGCAGCUGUUGUUCGGUUCGUGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCUUGGGUCAGACAUUUAGUUGCCUGUUAGAUGGUUAAGUAAGUU .....(((((((((..(((((((.(((..(..(((.((.((((((.((((...(((.....))))))))))))).)).)))..)..)))..)))))))..)))))))))........... (-36.55 = -37.00 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:53 2006