Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 823,079 – 823,174 |
Length | 95 |
Max. P | 0.993228 |
Location | 823,079 – 823,174 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 72.00 |
Mean single sequence MFE | -21.58 |
Consensus MFE | -14.85 |
Energy contribution | -16.60 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.15 |
Mean z-score | -2.02 |
Structure conservation index | 0.69 |
SVM decision value | 2.38 |
SVM RNA-class probability | 0.993228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 823079 95 - 27905053 CUUAUAUGUGCGGAACAACUUUUGAUUUGUUUGUAUGUAAUUUGUAUACCCUUGCUGAGUGCAUAUUGAUUUCACUCUUAGUUUGCCACUCAGUU------ ....((((((((.(((((........)))))))))))))..............((((((((((.(((((........))))).)).)))))))).------ ( -22.00) >DroSec_CAF1 5467 90 - 1 ---AUAUGUGACGAACAACCUUUGAAACUUUGGUAUGUA-UUUGUAUACCCUUGCAGAGUGCAUAUUGGCUUUAGUCAGAGUUUGCCACUUA-UU------ ---....(((.(((((....(((((....(..(((((((-((((((......)))))).)))))))..)......)))))))))).)))...-..------ ( -22.20) >DroSim_CAF1 2647 88 - 1 ---UUGUUCGUC--ACAACCUUUGAAACUUUGGUAUGUA-UUUGUAUACCCUUGCAGAGUGCAUAUUGACUUCAGUCAGAGUUUGCCACUAU-UU------ ---......((.--.(((.((((((....(..(((((((-((((((......)))))).)))))))..)......)))))).)))..))...-..------ ( -21.20) >DroYak_CAF1 5797 92 - 1 --------UGUAAAUAAACCUUUGAUAUGUUGGUAUGUA-UUUGUAUGCCCUUGCAGUGUGCAGACUAAUUUUAAUCAUAGGUUGCAACUUAGUAAAGGAG --------........(((((.((((..((((((.((((-((((((......))))).))))).))))))....)))).)))))................. ( -20.90) >consensus ___AUAUGUGUCGAACAACCUUUGAAACGUUGGUAUGUA_UUUGUAUACCCUUGCAGAGUGCAUAUUGACUUCAGUCAGAGUUUGCCACUUA_UU______ ...............(((.((((((...(((((((((((.((((((......)))))).))))))))))).....)))))).)))................ (-14.85 = -16.60 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:29 2006