Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,782,457 – 4,782,574 |
Length | 117 |
Max. P | 0.658921 |
Location | 4,782,457 – 4,782,574 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.25 |
Mean single sequence MFE | -21.33 |
Consensus MFE | -19.07 |
Energy contribution | -19.27 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.21 |
Structure conservation index | 0.89 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658921 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4782457 117 - 27905053 AAUUUAAAAGAUAGCUGUCAGUUA--UAAUUAAGCCAUUGCCCGAAAUCUAACCCCAGCAUCAUCAACACAUUAAACCGUAUAUAAAAA-CAGCUGAGCGAUCAUAAAAUCACUCGGCUG .........(((.((((...((((--.......((....))........))))..)))))))...........................-((((((((.(((......))).)))))))) ( -22.66) >DroSec_CAF1 17763 117 - 1 AAUUUAAUAGAUAGCUGUCAGUUA--UAAUUAAGCCAUUGCCCGAAAUCUAACCCCAGCGUCAUCAACACAUUAAACCGUAUAUGAAAA-CAGCUGAGCGGUCAUAAAAUCACUCGGCUG .........(((.((((...((((--.......((....))........))))..)))))))...........................-((((((((.(((......))).)))))))) ( -21.66) >DroSim_CAF1 13183 119 - 1 AAUUUAAUAGAUAGCUGUCAGUUAUAUAAUUAAGCCAUUGCCCGAAAUCUAACCCCAGCGUCAUCAACACAUUAAACCGUAUAUGAAAA-CAGCUGAGCGGUCAUAAAAUCACUCGGCUG .........(((.((((...((((.........((....))........))))..)))))))...........................-((((((((.(((......))).)))))))) ( -21.53) >DroEre_CAF1 17982 117 - 1 AAUUUAAAAGUUAGCUGUCAGUUA--UAAUGAAGCCAUUGCCCGAAAUCUAACCCGAGCAUCAUCAACACAUUAAACGGGAUAUAAAAA-CAGCUGAGAGGUCAUAAAAUCACUCGACUG ........((((((((((...(((--(((((....)))..((((...........((......))...........)))).)))))..)-)))))(((.(((......))).))))))). ( -19.85) >DroYak_CAF1 18171 118 - 1 AAUUUAAAAGAUAGCUGUCAGUUA--UAAUUAAGCCAUUGCCCGAAAUCUAACCCCAGCAUCAUCAACACAUUAAACGGGAUAUAAAAAGCAGCUGAGAGGUCAUAAAAUCACUCGGCUG .........(((.((((...((((--.......((....))........))))..)))))))............................((((((((.(((......))).)))))))) ( -20.96) >consensus AAUUUAAAAGAUAGCUGUCAGUUA__UAAUUAAGCCAUUGCCCGAAAUCUAACCCCAGCAUCAUCAACACAUUAAACCGUAUAUAAAAA_CAGCUGAGCGGUCAUAAAAUCACUCGGCUG .........(((.((((...((((.........((....))........))))..)))))))............................((((((((.(((......))).)))))))) (-19.07 = -19.27 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:52 2006