Locus 1646

Sequence ID 3R_DroMel_CAF1
Location 4,781,141 – 4,781,243
Length 102
Max. P 0.736517
window2715

overview

Window 5

Location 4,781,141 – 4,781,243
Length 102
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 86.14
Mean single sequence MFE -31.04
Consensus MFE -21.63
Energy contribution -22.55
Covariance contribution 0.92
Combinations/Pair 1.10
Mean z-score -2.03
Structure conservation index 0.70
SVM decision value 0.44
SVM RNA-class probability 0.736517
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4781141 102 - 27905053
UCUUCUUUCCGCAUGCUAGCUGAACUGGCAACAUGUUGCU-GUAGAUCCGGCAAUAUGGGGCUAUAAAUGUUGC-------CAGCGC----CAACCUGUUGAAAGCGAAAUUUU
.........(((..((.(((.....((((..(((((((((-(......))))))))))..)))).....)))))-------(((((.----.....)))))...)))....... ( -29.60)
>DroSec_CAF1 16547 100 - 1
--UUCUUUCCGCAUGCUAGCUGAACUGGCAACAUGUUGCU-GUAGAUCCGGCAAUAUGGGGCUAUAAAUGUUGC-------CUGCGC----CAACCUGUUGAAAGCGAAAUUUU
--..(((((((((.((.(((.....((((..(((((((((-(......))))))))))..)))).....)))))-------.)))).----.........)))))......... ( -30.20)
>DroSim_CAF1 12033 102 - 1
UCUUCUUUCCGCAUGCUAGCUGAACUGGCAACAUGUUGCU-GUAGAUCCGGCAAUAUGGGGCUAUAAAUGUUGC-------CAGCGC----CAACCUGUUGAAAGCGAAAUUUU
.........(((..((.(((.....((((..(((((((((-(......))))))))))..)))).....)))))-------(((((.----.....)))))...)))....... ( -29.60)
>DroEre_CAF1 16776 106 - 1
UCUUCUUUCCGCAUGCUAGCUGAACUGGCAACAUGUUGCU-GUAGAUCCGGCAAUAUGGGGCUAUAAAUGUUGC-------CAGCGCCAGCCAACCUGUUGAAAGCGAAAUUUU
....(((((.(((.(...((((..((((((((((.....(-((((..(((......)))..))))).)))))))-------)))...))))...).))).)))))......... ( -34.40)
>DroAna_CAF1 16487 102 - 1
UCUUCUUUCCGCAUGCUAGGCUAAACAGCAACAUGUUGGUAGUAAAGCUAGCAACACUG--------AUGUUGCUAAGCUACAGCGC----CAACCUGUUGAAAGCGAAAUUUU
.........(((..(((.(......))))((((.((((((.((..(((((((((((...--------.))))))).))))...))))----)))).))))....)))....... ( -31.40)
>consensus
UCUUCUUUCCGCAUGCUAGCUGAACUGGCAACAUGUUGCU_GUAGAUCCGGCAAUAUGGGGCUAUAAAUGUUGC_______CAGCGC____CAACCUGUUGAAAGCGAAAUUUU
....(((((.(((((((((.....)))))).(((((((((.(.....).)))))))))((........(((((........)))))........))))).)))))......... (-21.63 = -22.55 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:46 2006