Locus 1643

Sequence ID 3R_DroMel_CAF1
Location 4,777,570 – 4,777,686
Length 116
Max. P 0.999858
window2707

overview

Window 7

Location 4,777,570 – 4,777,686
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 74.62
Mean single sequence MFE -27.07
Consensus MFE -15.79
Energy contribution -18.10
Covariance contribution 2.31
Combinations/Pair 1.16
Mean z-score -3.33
Structure conservation index 0.58
SVM decision value 4.28
SVM RNA-class probability 0.999858
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4777570 116 - 27905053
AACUGGAACGGGUAUAAUC--AGC-UUUCAGAAAUCACACAUUUUCUACCCAAAUAGUUGGACAUUGUGGACUUUUUGAAAGGUGCAUUAUACUUACCAAAAUCGCCA-AUUUCAAUCAG
...(((...((((((((((--(.(-(((((((((((.((((...((((.(......).))))...)))))).)))))))))).)).))))))))).))).........-........... ( -29.60)
>DroSec_CAF1 13081 92 - 1
AACCGGAACGGGUAUAAUC--AGC-UUUCAGAAAUCAC-------------------------AUUGUGGACUUUUUGAAAGCUGCAUUAUGCUUACCAAAAUUGCCAAAUUUCAAUAAG
....((...((((((((((--(((-(((((((((((((-------------------------...))))..))))))))))))).))))))))).))...................... ( -27.00)
>DroEre_CAF1 13215 120 - 1
AACCGGAACCGGUAUAAUCUCAGCUUCUCAGAAACCACACAAUGACUUUCCUUACAGCUAGACAUUGUGUACCUUUUGAAAAGUGCAUUAUACUAACCAAAAUCGCCAAAUUUUAAUGAG
....((....((((((((....((((.((((((...((((((((.((..(......)..)).))))))))...)))))).))))..))))))))..))...................... ( -24.50)
>DroYak_CAF1 13369 120 - 1
AACCGGAAUCGGUAUAAUCCCAACAUUUCAAAAACCACACAAUGACAUUCUCAAGAGUUUGACAUUGUGGACUUUUUGAAAAGUGUAUUAUACUUACCAAAACCGCCAAAUUUUAAGAAG
....((....((((((((....((.(((((((((...(((((((.((..((....))..)).)))))))...))))))))).))..))))))))..))...................... ( -27.20)
>consensus
AACCGGAACCGGUAUAAUC__AGC_UUUCAGAAACCACACAAUGACUUUCC_AA_AGUU_GACAUUGUGGACUUUUUGAAAAGUGCAUUAUACUUACCAAAAUCGCCAAAUUUCAAUAAG
....((...(((((((((....((.(((((((((...(((((((.((............)).)))))))...))))))))).))..))))))))).))...................... (-15.79 = -18.10 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:38 2006