Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,774,541 – 4,774,646 |
Length | 105 |
Max. P | 0.625254 |
Location | 4,774,541 – 4,774,646 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.61 |
Mean single sequence MFE | -15.52 |
Consensus MFE | -11.02 |
Energy contribution | -11.02 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.71 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625254 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4774541 105 - 27905053 -----------UUAUUCUCCA--UUUAAAAUUUAUCUUUAUGUCAAUUAAAAGUAAUUUUCCACU--CUCAUCUCAUAGUUUUCGGCCACUUAAUUGCAUUCAGCUAACAAUGUGGCUAA -----------..........--....(((.(((..((((.......))))..))).))).....--.................((((((......((.....)).......)))))).. ( -11.82) >DroSec_CAF1 10074 105 - 1 -----------UUCUUCUCCA--UUUUAAAUUUAUCUUUAUGUCAAUUAAAACUAAUUUUCCACU--CUCAUCCCAUAGUUUUCGGCCACUUAAUUGCAUUCAGCUAACAAUGUGGCUAA -----------..........--.........................(((((((..........--.........))))))).((((((......((.....)).......)))))).. ( -12.23) >DroEre_CAF1 10177 116 - 1 UGGCGACUGAUUUCUUCUCCG--UUUUAAAUUCAGCUUUAUGUCAAUUAAAAGCCAUUUUCCACU--CUCAUCUCAUAGUUUUCGGCCACUUAAUUGCAUUCAGCUAACAAUGUGGCUAA ((((.((.((.....))....--..........((((..(((.(((((((..(((..........--.................)))...))))))))))..))))......)).)))). ( -19.53) >DroYak_CAF1 10319 116 - 1 AGAUAUCUGGUUUCUUCUCCA--UUUUUAAUUUAUCUUUAUGUCAAUUAAAAGUAAUUUUCCACU--CUCAUCCCAAAGUUUUCGGCCACUUAAUUGCAUUCAGCUAACAAUGUGGCUAA .((...((((........))(--(((((((((.((......)).))))))))))...........--..........))...))((((((......((.....)).......)))))).. ( -16.62) >DroAna_CAF1 10049 120 - 1 UUUCAUCUAUUUUCCUCUUCAGUCUUUUAAUUAAACUUUAUGUCAAUUAAAAGUCAUUUUCAACUCUCUCAUCUUUCUGUUUUCGGCCACUUAAUUGCAUCCAGCUAACAAUGUGGCUAA .....................(.(((((((((..((.....)).))))))))).).............................((((((......((.....)).......)))))).. ( -17.42) >consensus ______CU__UUUCUUCUCCA__UUUUAAAUUUAUCUUUAUGUCAAUUAAAAGUAAUUUUCCACU__CUCAUCUCAUAGUUUUCGGCCACUUAAUUGCAUUCAGCUAACAAUGUGGCUAA ....................................................................................((((((......((.....)).......)))))).. (-11.02 = -11.02 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:30 2006