Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,774,381 – 4,774,501 |
Length | 120 |
Max. P | 0.976485 |
Location | 4,774,381 – 4,774,501 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.42 |
Mean single sequence MFE | -22.70 |
Consensus MFE | -13.70 |
Energy contribution | -15.36 |
Covariance contribution | 1.66 |
Combinations/Pair | 1.12 |
Mean z-score | -2.61 |
Structure conservation index | 0.60 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4774381 120 + 27905053 UGAAGUAUCUUCUUCACUCUCCAUCUCCAUCAAUUAAGCACUGCCAUGCUGCUUAAGCCAACCUAAAUGUCUGCUUAGGCAUCGCAAUCUUGGGCACUUCAAUCUCAGGAUUCCCCCAUC (((((......)))))....................((((......))))((((((((..((......))..))))))))...(.(((((((((.........))))))))).)...... ( -24.80) >DroSec_CAF1 9916 118 + 1 UGAAGUAUCUUCUUCACUCUCCAUCUCCAUCAAUUAAGCACUACCAUGCUGCUUAAGCCAACCUAAAUGUCUGCUUAGGCAUC--AAUCUCGGGCACUUCAAUCUCAGGAUUCCCCCAUC ((((((..((..........................((((......))))((((((((..((......))..))))))))...--......))..))))))......((......))... ( -23.60) >DroEre_CAF1 10017 120 + 1 UGAAGUAUCUUCUUCAGUCUCCAUCCUCAUCAAUUAUACACUUCCAUGCUGCUUGAGCCAACCUAAAUGUGUGCUUAGGCAUCGCAAUCUUGGGCACUUCAAUCUUAGGAUUCCCCCAUC (((((......)))))..............................((((((((((((..((......))..)))))))))..)))....((((....((........))....)))).. ( -23.20) >DroYak_CAF1 10159 120 + 1 UGAGGCAUCUUCUUCACUCUCCAUCCUCAUCAAUCAAAGACUUCCAUGCUGCUUAAGCCAACCUAAAUGUCUGCUUAGGCAUCGCAAUCUUGGGCACUUCAAUCUUAGGAUUCCCCCAUC (((((...................))))).................((((((((((((..((......))..)))))))))..)))....((((....((........))....)))).. ( -22.91) >DroAna_CAF1 9915 94 + 1 GGAAUUAUCUUU---A-UUUCAAUCUUCCUCU----AAAGCU----UCCUUCUUAAGCCAACCUAAAUGCCUGCUUAGGCAUUUCAAUCUUG--------------AGGAAUCCCCCAUU (((((.......---)-))))....((((((.----...(((----(.......))))......((((((((....)))))))).......)--------------)))))......... ( -19.00) >consensus UGAAGUAUCUUCUUCACUCUCCAUCUUCAUCAAUUAAACACUUCCAUGCUGCUUAAGCCAACCUAAAUGUCUGCUUAGGCAUCGCAAUCUUGGGCACUUCAAUCUCAGGAUUCCCCCAUC (((((......))))).................................(((((((((..((......))..)))))))))....(((((((((.........)))))))))........ (-13.70 = -15.36 + 1.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:29 2006