Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,772,252 – 4,772,349 |
Length | 97 |
Max. P | 0.791640 |
Location | 4,772,252 – 4,772,349 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.13 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -13.30 |
Energy contribution | -15.33 |
Covariance contribution | 2.03 |
Combinations/Pair | 1.12 |
Mean z-score | -2.32 |
Structure conservation index | 0.43 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4772252 97 - 27905053 UUGCUGCCG------UUGCCGCUUGUUCUACUUUGAAAUUUCACUUUUCAAAUCCCAGCUCGUGUGU------GAGUGU---AGA-----UGCGGCAAAACAGGCAGGC---AAAAAAAA ((((((((.------(((((((....((((((((((((.......))))))).....(((((....)------))))))---)))-----.)))))))....)))).))---))...... ( -36.70) >DroSec_CAF1 7673 96 - 1 UUGCUGCCG------CUGCCGCUUGUUCUACUUUGAAAUUUCACUUUUCAAAUCCCAGCUCGUGUGU------GAGUGUAGUAGA-----UGCGGCCAAGCAGGCAGGC---AAAA---- (((((((((------(((((((....((((((((((((.......))))))).....(((((....)------))))...)))))-----.)))))..))).)))).))---))..---- ( -36.50) >DroSim_CAF1 6116 102 - 1 UUGCUGCCGCUGCCGCUGCCGCUUGUUCUACUUUGAAAUUUCACUUUUCAAAUCCCAGCUCGUGUGU------GAGUGUAGUAGA-----UGCGGCCAAGCAGGCAGGC---AAAA---- ....((((..((((((((((((....((((((((((((.......))))))).....(((((....)------))))...)))))-----.)))))..))).)))))))---)...---- ( -37.40) >DroEre_CAF1 7845 95 - 1 UUGCUGCCG------CUGCCGCUUGUUCUACUUUGAAAUUUCACUUUUCAAAUCCGAGCUCGUGUGU------GAG-----UAGA-----UGCGGGCCAGCAGGCAAAA---AACAAAAA ....(((((------(((..((((((((((((((((((.......))))).(..((....))..)..------)))-----))))-----.)))))))))).))))...---........ ( -27.80) >DroYak_CAF1 7864 95 - 1 UUGCUGCCG------CUGCCGCUUGUUCUACUUUGAAAUUUCACUUUUCAAAUCCCAGCUCGUGUGU------GAG-----UAGA-----UACGGGCAAGCAGGCAAAA---AAUAAAAA ....(((((------((...((((((((((((((((((.......)))))))((...((....))..------)))-----))))-----.)))))).))).))))...---........ ( -26.00) >DroAna_CAF1 7680 108 - 1 UUGUU------------GCCGGUUGUUCUACUUUGAAAUUUCACUUUUCAAAUGUAAGCUUGUGUCUAUGACUGUGUGUGCUAGAGUGUGUGCCGUCGGUUGUGCAGAAGAAAAAAACAA .((((------------.....((.(((((((((((((.......))))))).)))....((..(...((((.(..((..(....)..))..).))))...)..))))).))...)))). ( -22.30) >consensus UUGCUGCCG______CUGCCGCUUGUUCUACUUUGAAAUUUCACUUUUCAAAUCCCAGCUCGUGUGU______GAGUGU__UAGA_____UGCGGCCAAGCAGGCAGAA___AAAAAAAA ...(((((.........(((((....((((.(((((((.......))))))).....((((............))))....))))......)))))......)))))............. (-13.30 = -15.33 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:28 2006