Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,769,170 – 4,769,282 |
Length | 112 |
Max. P | 0.890311 |
Location | 4,769,170 – 4,769,282 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.53 |
Mean single sequence MFE | -28.87 |
Consensus MFE | -17.70 |
Energy contribution | -16.85 |
Covariance contribution | -0.85 |
Combinations/Pair | 1.46 |
Mean z-score | -1.72 |
Structure conservation index | 0.61 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4769170 112 + 27905053 -----AAACU--UCAUU-UCGUACCUUAGCCUGCUGAUCGAUCUCCUUGUCUAUGGCUUCCACCUUGGCCAGAUACUUGAGGUGCAGCUCCAGCAGGCGAUCCACCUUCUCGUGAUCAUU -----.....--.....-..........((((((((...(((......)))...((((..(((((..(........)..))))).)))).))))))))((((.((......))))))... ( -32.90) >DroVir_CAF1 6329 116 + 1 UUUAUGGACU--UAAGG--CUUACCUUGGGUUGCUGAUCUAUUUCCCUGUCGAUGGCCUCCACCUUAGCCAAAUACUUGAGAUGUAGCUCCAGCAGGCGAUCAACCUUCUCGUGAUCGUU ......((((--(((((--....)))))))))((((..((((.(((..((...((((..........))))...))..).)).))))...)))).((((((((.........)))))))) ( -30.20) >DroGri_CAF1 4834 114 + 1 ----UGCGCU--UGAUUUGCUUACCUUCGGCUGCUGGUCGAUUUCCCUGUCAAUGGUUUCCACUUUGGCCAAAUAUUUGAGAUGCAGCUCCAGCAGACGAUCAACCUUCUCGUGAUCGUU ----(((((.--......))........((((((..((((((......)))..(((((........))))).........)))))))))...)))((((((((.........)))))))) ( -27.90) >DroWil_CAF1 5188 113 + 1 -----ACAAU--UCAAUGACCAACCUUAAUCUGUUGAUCGAUUUCUUUAUCGAUGGCCUCCACUUUGGCCAAGUAUUUCAAAUGCAACUCCAACAGACGGUCCACCUUUUCAUGAUCGUU -----.....--..(((((.((.......(((((((((((((......))))))((((........))))..((((.....)))).....))))))).((....))......)).))))) ( -27.20) >DroMoj_CAF1 4846 112 + 1 C------AGC--UAAGGCACUCACCUUUGGUUGCUGAUCAAUUUCUUUGUCGAUGGCCUCCACCUUGGCCAAAUACUUGAGAUGCAGCUCCAGCAGGCGAUCAACCUUUUCGUGAUCGUU .------.((--(((((......)))).((..((((....(((((...((...(((((........)))))...))..))))).)))).))))).((((((((.........)))))))) ( -33.60) >DroAna_CAF1 4590 112 + 1 -------ACUUUACGUU-ACUUGCCUUUGUCUGCUGAUCUAUUUCCUUAUCGAUAGCCUCCACCUUGACCAGAUAUUUCAAGUGAAGCUCCAGCAGUCGGUCCACCUUCUCGUGGUCAUU -------..........-.........((.(((((((((.((......)).)))(((.((...(((((.........))))).)).))).)))))).))(.((((......)))).)... ( -21.40) >consensus _______ACU__UCAUU_ACUUACCUUAGGCUGCUGAUCGAUUUCCUUGUCGAUGGCCUCCACCUUGGCCAAAUACUUGAGAUGCAGCUCCAGCAGGCGAUCAACCUUCUCGUGAUCGUU ..............................((((((....(((((...((...(((((........)))))...))..))))).......))))))((((((.((......)))))))). (-17.70 = -16.85 + -0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:25 2006