Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,761,975 – 4,762,066 |
Length | 91 |
Max. P | 0.993733 |
Location | 4,761,975 – 4,762,066 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 88.70 |
Mean single sequence MFE | -39.73 |
Consensus MFE | -32.69 |
Energy contribution | -32.08 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.18 |
Mean z-score | -4.29 |
Structure conservation index | 0.82 |
SVM decision value | 2.42 |
SVM RNA-class probability | 0.993733 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4761975 91 + 27905053 CAAGGAUAUCGCCACCAGG---CCGGUUUCGCUGCAUCAAAUGGCCAAUGAGGCAGCGGAGUCGAACUGGUGCUACCAGGAUAAUUGGAAGCAU ...((......))(((((.---.((..((((((((.(((.........))).))))))))..))..)))))(((.((((.....)))).))).. ( -37.50) >DroSec_CAF1 1144 91 + 1 CAAGGAGAUCGCCACCAGA---CCGGCUUCGCUGCACCAAAUGGCCAAUGAGGCAGCGGAGUCGAACUGGUGCUACCAGGAUAAUUGGAAGCAU ...((......))(((((.---.((((((((((((..((.........))..))))))))))))..)))))(((.((((.....)))).))).. ( -39.20) >DroSim_CAF1 1147 91 + 1 UAAGGAGAUCCCCACCAGA---CCGGCUUCGCUGCAUCAAAUGGCCAAUGAGGCAGCGGAGUCGAACUGGUGCUACCAGGAUAAUUGGAAGCAU ...((......))(((((.---.((((((((((((.(((.........))).))))))))))))..)))))(((.((((.....)))).))).. ( -39.70) >DroEre_CAF1 1118 91 + 1 CCAGGAGACCUCCACCAGA---CCGGCUUCGCUGCACCAAAUGGCCAAUGAGGCAGCGGAGUCGAACUGGUGCUACCAGGAUAAUUGGAAGCAU ...(((....)))(((((.---.((((((((((((..((.........))..))))))))))))..)))))(((.((((.....)))).))).. ( -41.30) >DroYak_CAF1 1157 94 + 1 CAAGGAGAGCGCCACCAGACAACCGGCUUCGCUGCACCAAAUGGCCAAUGAGGCAGCGGAGUCGAACUGGUGCUACCAGGAUAAUUGGAAGCAU ...((......))(((((.....((((((((((((..((.........))..))))))))))))..)))))(((.((((.....)))).))).. ( -36.70) >DroAna_CAF1 1068 91 + 1 CAAGGCGAUUAACGCCAAU---UCGGCUACCCUGCAGAAACUGGCCAAGGCUGCAGGGGAGUCGAAUUGGUGCUACCAGGAUAAUUGGAAUCAU ......((((..(((((((---((((((.((((((((...((.....)).)))))))).)))))))))))))...((((.....)))))))).. ( -44.00) >consensus CAAGGAGAUCGCCACCAGA___CCGGCUUCGCUGCACCAAAUGGCCAAUGAGGCAGCGGAGUCGAACUGGUGCUACCAGGAUAAUUGGAAGCAU ...((......))(((((.....((((((((((((.....((.....))...))))))))))))..)))))(((.((((.....)))).))).. (-32.69 = -32.08 + -0.61)
Location | 4,761,975 – 4,762,066 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 88.70 |
Mean single sequence MFE | -31.55 |
Consensus MFE | -26.55 |
Energy contribution | -26.25 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.20 |
Mean z-score | -1.87 |
Structure conservation index | 0.84 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708697 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4761975 91 - 27905053 AUGCUUCCAAUUAUCCUGGUAGCACCAGUUCGACUCCGCUGCCUCAUUGGCCAUUUGAUGCAGCGAAACCGG---CCUGGUGGCGAUAUCCUUG ..(((.(((.......))).)))(((((..((....((((((.(((.........))).))))))....)).---.)))))............. ( -29.40) >DroSec_CAF1 1144 91 - 1 AUGCUUCCAAUUAUCCUGGUAGCACCAGUUCGACUCCGCUGCCUCAUUGGCCAUUUGGUGCAGCGAAGCCGG---UCUGGUGGCGAUCUCCUUG ..(((.(((.......))).)))(((((..((.((.((((((.(((.........))).)))))).)).)).---.)))))............. ( -30.40) >DroSim_CAF1 1147 91 - 1 AUGCUUCCAAUUAUCCUGGUAGCACCAGUUCGACUCCGCUGCCUCAUUGGCCAUUUGAUGCAGCGAAGCCGG---UCUGGUGGGGAUCUCCUUA ..(((.(((.......))).)))(((((..((.((.((((((.(((.........))).)))))).)).)).---.)))))((((....)))). ( -34.10) >DroEre_CAF1 1118 91 - 1 AUGCUUCCAAUUAUCCUGGUAGCACCAGUUCGACUCCGCUGCCUCAUUGGCCAUUUGGUGCAGCGAAGCCGG---UCUGGUGGAGGUCUCCUGG ..(((.(((.......))).)))(((((..((.((.((((((.(((.........))).)))))).)).)).---.)))))(((....)))... ( -32.90) >DroYak_CAF1 1157 94 - 1 AUGCUUCCAAUUAUCCUGGUAGCACCAGUUCGACUCCGCUGCCUCAUUGGCCAUUUGGUGCAGCGAAGCCGGUUGUCUGGUGGCGCUCUCCUUG .(((..((((....((.((((((...((.....))..)))))).....))....)))).)))(((..(((((....)))))..)))........ ( -30.00) >DroAna_CAF1 1068 91 - 1 AUGAUUCCAAUUAUCCUGGUAGCACCAAUUCGACUCCCCUGCAGCCUUGGCCAGUUUCUGCAGGGUAGCCGA---AUUGGCGUUAAUCGCCUUG ..(((.(((.......)))((((.((((((((.((.((((((((.((.....))...)))))))).)).)))---))))).)))))))...... ( -32.50) >consensus AUGCUUCCAAUUAUCCUGGUAGCACCAGUUCGACUCCGCUGCCUCAUUGGCCAUUUGGUGCAGCGAAGCCGG___UCUGGUGGCGAUCUCCUUG ..(((.(((.......))).)))(((((.(((.((.((((((.(((.........))).)))))).)).)))....)))))............. (-26.55 = -26.25 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:16 2006