Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,757,852 – 4,757,969 |
Length | 117 |
Max. P | 0.521437 |
Location | 4,757,852 – 4,757,969 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 81.42 |
Mean single sequence MFE | -28.04 |
Consensus MFE | -15.56 |
Energy contribution | -17.28 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.14 |
Mean z-score | -1.89 |
Structure conservation index | 0.55 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521437 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4757852 117 - 27905053 CGACUUAAGUUAUCGAUAACUUAUUGAUGAACCAUUUUGUUGUUACUCGCUAGUAAUGGCGAUUCGUUAGCAGUUAAGAGCUUAAAGGCUAGAACGAAAUCCAAAUAGACAGACGAA ((.......(((((((((...))))))))).....((((((.....((((((....))))))(((((((((..((((....))))..))))..))))).........)))))))).. ( -28.20) >DroSec_CAF1 85527 116 - 1 CGACUUAAGUUAUCGAUAACUUGUUGAUGAACCAUUUUGUUGUUACUCGCCAGUAAUGGCGAUCCGUUAGCGGUUACCAGCU-AAAGGCUAGAAAGAAAUGUAAAUAGCCAGACGAA ((((..((.((((((((.....))))))))....))..))))....((((((....))))))..(((((((........)))-...(((((...(....).....))))).)))).. ( -31.90) >DroSim_CAF1 89460 116 - 1 CGACUUAAGUUAUCGAUAACUUGUUGAUGAACCAUUUUGUUGUUACUCGCCAGUAAUGGCGAUCCGUUAGCGGUUACCAGCU-AAAGGCUAGAAAGAAAUCUAAAUAGCCAGACGAA ((((..((.((((((((.....))))))))....))..))))....((((((....))))))..(((((((........)))-...(((((...((....))...))))).)))).. ( -33.20) >DroEre_CAF1 90109 115 - 1 CGUU-UAAGUUUUCGAUAACUUUUCGAUUAAGCAUUUUG-UGUUACUCGCCAGUAGUGGCGAUUAUUUAGCGAUAACCAGCUAGAAGGCCUAUAGCAAAUCAAAAUAGCCCGAUAAA .(((-(((....((((.......))))))))))((((((-(((((.((((((....))))))...((((((........)))))).......)))))...))))))........... ( -25.20) >DroYak_CAF1 89933 110 - 1 CGUUUUAAGUUUUCGAUAACUUUUCGAUUAAACAUUUCU-UGUUACUCACCAGUAAUGACGAUUCUUUAGCGGUAACCAGCUAAAAGGCUAUCAACAACUCAAAAUAGCC------A ((((....((((((((.......))))..))))......-.((((((....))))))))))....((((((........)))))).((((((............))))))------. ( -21.70) >consensus CGACUUAAGUUAUCGAUAACUUGUUGAUGAACCAUUUUGUUGUUACUCGCCAGUAAUGGCGAUUCGUUAGCGGUUACCAGCU_AAAGGCUAGAAAGAAAUCAAAAUAGCCAGACGAA .........((((((((.....))))))))................((((((....))))))......(((........)))....(((((..............)))))....... (-15.56 = -17.28 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:14 2006