Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 821,186 – 821,294 |
Length | 108 |
Max. P | 0.604916 |
Location | 821,186 – 821,294 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.65 |
Mean single sequence MFE | -40.30 |
Consensus MFE | -28.04 |
Energy contribution | -29.08 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.98 |
Structure conservation index | 0.70 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 821186 108 - 27905053 UACCAGAUUGCCGUGAAUUCAUAGUCG--------UUCCUCGGAGCUGCGGGGUGAUUUGCCAGGGAAGGAUGGCUA----AGUGGGCGCCCUGAACCUGAAUGAAUCGGGGAAUGGGAA ..(((..((.(((...(((((.....(--------(((....))))..(((((((((((((((........)))).)----)))...)))))))....)))))....))).)).)))... ( -34.60) >DroSec_CAF1 3945 108 - 1 UACCAGAUUGCCGUGAAUUCAUGGUCG--------UUCCUCGGAGCUGCGGGGUGAUUUGCCAGGGAAGGAUGGCUA----AGUGGGCGCCCAAAACCUGAAUGAAUCGGGGAAUGGGAA ..((.....((((((....))))))((--------((((((((..(..((((.......((((........))))..----..(((....)))...))))...)..)))))))))))).. ( -38.80) >DroSim_CAF1 1124 108 - 1 UACCAGAUUGCCGUGAAUUCAUGGUCG--------UUCCUCGGAGCUGCGGGGUGAUUUGCCAGGGAAGGAUGGCUA----AGUGGGCGCCCAAAACCUGAAUGAAUCGGGGAAUGGGAA ..((.....((((((....))))))((--------((((((((..(..((((.......((((........))))..----..(((....)))...))))...)..)))))))))))).. ( -38.80) >DroEre_CAF1 4375 107 - 1 CACCAGAUUGCCGUGAAUUCAUGGUG---------UUCCUCGGAGCUGCGGGGUUAUUUGCCAGUGUAGGAUGACUA----GGUAGGCGCCCCAAACCUAAAUGGAUCGGGGAAUGGGAA ..((.....((((((....))))))(---------((((((((......(((((.....(((..(.(((.....)))----.)..))))))))...((.....)).)))))))))))... ( -39.60) >DroYak_CAF1 1910 120 - 1 UACCAGAUUGCCGUGAAUUCAUGGUGGUUCUUCGGUUCCUCGGAGUUGCGGGGUGAUUUGCCUGUGAAGGAUAGCUACAUAAGUGGGCGCCCUGAACCUGAAUGGAUCGGGGAAUGGGAA ..(((.((..(((((....)))))..))((((((((((.((((.(((.(((((((.((..(.((((.((.....)).)))).)..))))))))))))))))..)))))))))).)))... ( -49.70) >consensus UACCAGAUUGCCGUGAAUUCAUGGUCG________UUCCUCGGAGCUGCGGGGUGAUUUGCCAGGGAAGGAUGGCUA____AGUGGGCGCCCAAAACCUGAAUGAAUCGGGGAAUGGGAA ..(((....((((((....))))))..........((((((((..(..((((.......((((........)))).........((....))....))))...)..)))))))))))... (-28.04 = -29.08 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:26 2006