Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,744,821 – 4,744,911 |
Length | 90 |
Max. P | 0.619401 |
Location | 4,744,821 – 4,744,911 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 90.92 |
Mean single sequence MFE | -32.12 |
Consensus MFE | -25.95 |
Energy contribution | -26.12 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.12 |
Mean z-score | -2.17 |
Structure conservation index | 0.81 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619401 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4744821 90 + 27905053 UUUGACUGCCA-UUUUUACAGUGGGAGUCGUAAAAUGUCUGACUGGCGGGCACAAAUUAAUGCUCAUGGCCGAGCUGCCGCCGAAGUCGGG ...((((.(((-((.....))))).)))).........((((((((((((((........)))))..(((......))))))..)))))). ( -33.10) >DroSec_CAF1 73010 90 + 1 UGUGACUGCCA-UUUUUACAGUGGGAGUCGUAAAAUGUCUGACUGGCGGGCACAAAUUAAUGCUCAUGGACGAGCUGCCGCCGAAGUCGGG ...((((.(((-((.....))))).)))).........(((((((((((.((.........((((......)))))))))))..)))))). ( -32.40) >DroSim_CAF1 76636 90 + 1 UGUGACUGCCA-UUUUUACAGUGGGAGUCGUAAAAUGUCUGACUGGCGGGCACAAAUUAAUGCUCAUGGCCGAGCUGCCGCCGAAGUCGGG ...((((.(((-((.....))))).)))).........((((((((((((((........)))))..(((......))))))..)))))). ( -33.10) >DroEre_CAF1 76984 90 + 1 AGUGACUGCCA-UUUUUACAGUGGGAGUCGUAAAAUGGCUGACUGGCGGGCACAAAUUAAUGCUCAUGGCCGAGUUGCCGCCGAAGUCAGA ...((((.(((-((.....))))).)))).........((((((((((((((........)))))..(((......))))))..)))))). ( -33.70) >DroYak_CAF1 76693 90 + 1 GUUGACUGCCA-UUUUUACAGUGGGAGUCGUAAAAUGUCUGACUGGCGGGCACAAAUUAAUGCUCAUGGCAGAGCUGCCGCCGAAGUCAGG ...((((.(((-((.....))))).)))).........((((((((((((((........)))))..((((....)))))))..)))))). ( -36.10) >DroAna_CAF1 73607 91 + 1 GCAGUCUGCAAAUUUCAACAGUGGGAGUCGUUAAAUGUCUAACUGGCGGGCACAAAUUAAUGCUCAUAGUUGAGGUGCCGUCGCAGUCAGG ...(.((((.........((((...((.(((...))).)).))))...(((((...(((((.......))))).)))))...)))).)... ( -24.30) >consensus UGUGACUGCCA_UUUUUACAGUGGGAGUCGUAAAAUGUCUGACUGGCGGGCACAAAUUAAUGCUCAUGGCCGAGCUGCCGCCGAAGUCAGG ...((((.(((..........))).)))).........(((((((((((.((.........((((......)))))))))))..)))))). (-25.95 = -26.12 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:12 2006