Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,719,516 – 4,719,650 |
Length | 134 |
Max. P | 0.755080 |
Location | 4,719,516 – 4,719,618 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 82.52 |
Mean single sequence MFE | -23.98 |
Consensus MFE | -14.75 |
Energy contribution | -14.64 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -2.11 |
Structure conservation index | 0.62 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4719516 102 + 27905053 CUCACUUGUUUAUGUCGACUUAGGCC-AGCCACAUUUGGUCAAAAGCAAAUUUGUUAUUUAACAAUUU---GCAAUUUCCAA-------UGCAAUGCGAUC---CAUUGCAAUGCG ......................((((-((......))))))....(((((((.(((....))))))))---)).........-------.(((.(((((..---..))))).))). ( -22.60) >DroPse_CAF1 91365 116 + 1 GCUAGUUGUUUAUGUCGACUUAGCCCCCAUCAUUUAUGGUCAAACACAAAUUUGUUAUUUAACAAUUUUGACCAUUUUCCAACGCCAAUUGCAAUGCGAUACCCAAUUGCAAUGCA ((((((((.......)))).))))...........(((((((((.......(((((....))))).)))))))))..............((((.((((((.....)))))).)))) ( -26.00) >DroEre_CAF1 68420 103 + 1 CUCAGUUGUUUAUGUCGACUUAGGCC-AACCGCUUUUGGUCAAAAGCAAAUUUGUUAUUUAACAAUUU---GCAAUUUCCAA------CUGCAAUGCGAUC---CAUUGCAAUGCG ...(((((........((((.((((.-....))))..))))....(((((((.(((....))))))))---))......)))------))(((.(((((..---..))))).))). ( -27.40) >DroYak_CAF1 67988 102 + 1 CUCAGUUGUUUAUGUCGACUUAGGCU-AACCGCUUUUGGUCAAAAGCAAAUUUGUUAUUUAACAAUUU---GCAAUUUCCAA-------UGCAAUGCGAUC---CAUUGCAAUGCG ....((((........((((.((((.-....))))..))))....(((((((.(((....))))))))---))......)))-------)(((.(((((..---..))))).))). ( -25.00) >DroAna_CAF1 64827 102 + 1 GUCGGUUGUUUAUGUCGACUUAGGCC-AACCGAUUAUGGUCAAUAGCAAAUUUGUUAUUUAACAAUUU---CCAAUUUCCAA-------UGCAAUGCGAUC---CAUUGCAAUGCU ((((((((.....(((......))))-)))))))..((...(((((((....)))))))...))....---........((.-------(((((((.....---))))))).)).. ( -23.30) >DroPer_CAF1 90476 116 + 1 GCUAGUUGUUUAUGUCGACUUAGCCCCCAUCAUUUAUGGUCAAACACAAAUUUGUUAUUUAACAAUUUUUCCCAUUUUCCGACGCCAAUUGCAAUGCGAUACCCAAUUGCAAUGCA ...(((((....(((((.........((((.....))))........(((.(((((....))))).)))..........))))).)))))(((.((((((.....)))))).))). ( -19.60) >consensus CUCAGUUGUUUAUGUCGACUUAGGCC_AACCACUUAUGGUCAAAAGCAAAUUUGUUAUUUAACAAUUU___CCAAUUUCCAA_______UGCAAUGCGAUC___CAUUGCAAUGCG ...(((((.......)))))................(((............(((((....))))).............))).........(((.((((((.....)))))).))). (-14.75 = -14.64 + -0.11)
Location | 4,719,554 – 4,719,650 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 83.39 |
Mean single sequence MFE | -23.65 |
Consensus MFE | -15.32 |
Energy contribution | -15.35 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.09 |
Mean z-score | -2.88 |
Structure conservation index | 0.65 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755080 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4719554 96 + 27905053 UCAAAAGCAAAUUUGUUAUUUAACAAUUU---GCAAUUUCCAA-------UGCAAUGCGAUC---CAUUGCAAUGCGAUGCGUGUAAAUGUUAUAACCCAAUUUGAC--------AA ......(((((((.((((..(((((.(((---(((...((((.-------(((((((.....---))))))).)).))....)))))))))))))))..)))))).)--------.. ( -23.00) >DroPse_CAF1 91404 117 + 1 UCAAACACAAAUUUGUUAUUUAACAAUUUUGACCAUUUUCCAACGCCAAUUGCAAUGCGAUACCCAAUUGCAAUGCAAUGCGUGUAAAUGUUAGAAGCCAAUUUGACAAUUGGACAA .......((((.(((((....))))).)))).......((((((((..((((((.((((((.....)))))).)))))))))).....(((((((......)))))))..))))... ( -30.50) >DroSec_CAF1 64620 96 + 1 UCAAAAGCAAAUUUGUUAUUUAACAAUUA---GCAAUUGCCAA-------UGCAAUGCGAUC---CAUUGCAAUGCGAUGCGUGUAAAUGCUAUAAGCCAAUUUGAC--------AA (((((.((....(((((....))))).((---(((.((((((.-------((((.(((((..---..))))).)))).))...)))).)))))...))...))))).--------.. ( -22.10) >DroEre_CAF1 68458 97 + 1 UCAAAAGCAAAUUUGUUAUUUAACAAUUU---GCAAUUUCCAA------CUGCAAUGCGAUC---CAUUGCAAUGCGAUGCGUGUAAAUGUUAUAAGCCAAUUUGAC--------AA ......(((((((.(((...(((((.(((---(((...((((.------.(((((((.....---))))))).)).))....)))))))))))..))).)))))).)--------.. ( -22.40) >DroAna_CAF1 64865 96 + 1 UCAAUAGCAAAUUUGUUAUUUAACAAUUU---CCAAUUUCCAA-------UGCAAUGCGAUC---CAUUGCAAUGCUAUGCGUGUAAAUGUUAUAAGCCAAUUUGAC--------AA ......(((((((.(((...(((((....---...........-------(((((((.....---)))))))((((...)))).....)))))..))).)))))).)--------.. ( -17.30) >DroPer_CAF1 90515 117 + 1 UCAAACACAAAUUUGUUAUUUAACAAUUUUUCCCAUUUUCCGACGCCAAUUGCAAUGCGAUACCCAAUUGCAAUGCAAUGCGUGUAAAUGUUAGAAGCCAAUUUGACAAUUGGACAA ............(((((....)))))(((((..(((((....((((..((((((.((((((.....)))))).))))))))))..)))))..)))))((((((....)))))).... ( -26.60) >consensus UCAAAAGCAAAUUUGUUAUUUAACAAUUU___CCAAUUUCCAA_______UGCAAUGCGAUC___CAUUGCAAUGCGAUGCGUGUAAAUGUUAUAAGCCAAUUUGAC________AA .......((((((.(((.................................((((.((((((.....)))))).))))..((((....))))....))).))))))............ (-15.32 = -15.35 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:10 2006